RNA–Protein interactions for RNA: ENST00000323418.10

ME3-201, Transcript of malic enzyme 3, humanhuman

TSL 5 BASIC

Gene ME3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ME3-201ENST00000323418 NISCHQ9Y2I1 1504 aa53.25■■■■■ 6.11
ME3-201ENST00000323418 CCDC180Q9P1Z9 1646 aa47.79■■■■■ 5.24
ME3-201ENST00000323418 ABCC9O60706 1549 aa47.32■■■■■ 5.17
ME3-201ENST00000323418 RB1CC1Q8TDY2 1594 aa45.23■■■■■ 4.83
ME3-201ENST00000323418 NACADO15069 1562 aa45.01■■■■■ 4.8
ME3-201ENST00000323418 MYO15BQ96JP2 1530 aa44.54■■■■■ 4.72
ME3-201ENST00000323418 DCAF8L2P0C7V8 631 aa44.47■■■■■ 4.71
ME3-201ENST00000323418 UNC13AQ9UPW8 1703 aa44.44■■■■■ 4.7
ME3-201ENST00000323418 ZCCHC6Q5VYS8 1495 aaKnown RBP44.23■■■■■ 4.67
ME3-201ENST00000323418 DNAJC5BQ9UF47 199 aa44.16■■■■■ 4.66
ME3-201ENST00000323418 DCAF1Q9Y4B6 1507 aa44.06■■■■■ 4.64
ME3-201ENST00000323418 BICRAQ9NZM4 1560 aa44.03■■■■■ 4.64
ME3-201ENST00000323418 PABPN1Q86U42 306 aaKnown RBP eCLIP44■■■■■ 4.63
ME3-201ENST00000323418 SCRIBQ14160 1630 aa43.44■■■■■ 4.55
ME3-201ENST00000323418 SHROOM4Q9ULL8 1493 aa43.39■■■■■ 4.54
ME3-201ENST00000323418 CC2D2AQ9P2K1 1620 aa42.86■■■■■ 4.45
ME3-201ENST00000323418 EIF4G1Q04637 1599 aaKnown RBP42.84■■■■■ 4.45
ME3-201ENST00000323418 CECR2Q9BXF3 1484 aa42.6■■■■■ 4.41
ME3-201ENST00000323418 SMARCA4P51532 1647 aa41.54■■■■■ 4.24
ME3-201ENST00000323418 NCAPD3P42695 1498 aa41.52■■■■■ 4.24
ME3-201ENST00000323418 ATAD2BQ9ULI0 1458 aa41.43■■■■■ 4.22
ME3-201ENST00000323418 SMARCA2P51531 1590 aa41.33■■■■■ 4.21
ME3-201ENST00000323418 HMGXB3Q12766 1538 aa41.3■■■■■ 4.2
ME3-201ENST00000323418 BAZ1AQ9NRL2 1556 aaPredicted RBP41.29■■■■■ 4.2
ME3-201ENST00000323418 PEG3Q9GZU2 1588 aa41.17■■■■■ 4.18
ME3-201ENST00000323418 MROH2BQ7Z745 1585 aa41.04■■■■■ 4.16
ME3-201ENST00000323418 BAZ1BQ9UIG0 1483 aaKnown RBP41■■■■■ 4.15
ME3-201ENST00000323418 NESP48681 1621 aa40.78■■■■■ 4.12
ME3-201ENST00000323418 ERCC6Q03468 1493 aa40.77■■■■■ 4.12
ME3-201ENST00000323418 CUX2O14529 1486 aa40.72■■■■■ 4.11
ME3-201ENST00000323418 WIZO95785 1651 aa40.6■■■■■ 4.09
ME3-201ENST00000323418 LAMC3Q9Y6N6 1575 aa40.58■■■■■ 4.09
ME3-201ENST00000323418 THOC2Q8NI27 1593 aaKnown RBP40.44■■■■■ 4.06
ME3-201ENST00000323418 KIF21AQ7Z4S6 1674 aa40.39■■■■■ 4.06
ME3-201ENST00000323418 DNAJC5Q9H3Z4 198 aa40.29■■■■■ 4.04
ME3-201ENST00000323418 RSF1Q96T23 1441 aaPredicted RBP40.24■■■■■ 4.03
ME3-201ENST00000323418 CADPSQ9ULU8 1353 aa40.21■■■■■ 4.03
ME3-201ENST00000323418 PDS5BQ9NTI5 1447 aa40.2■■■■■ 4.03
ME3-201ENST00000323418 TOP2AP11388 1531 aaKnown RBP40.08■■■■■ 4.01
ME3-201ENST00000323418 MRC2Q9UBG0 1479 aa39.92■■■■□ 3.98
ME3-201ENST00000323418 WDR62O43379 1518 aa39.89■■■■□ 3.98
ME3-201ENST00000323418 CFTRP13569 1480 aa39.88■■■■□ 3.97
ME3-201ENST00000323418 CEP164Q9UPV0 1460 aa39.8■■■■□ 3.96
ME3-201ENST00000323418 FANCD2Q9BXW9 1451 aa39.77■■■■□ 3.96
ME3-201ENST00000323418 PRDM2Q13029 1718 aa39.7■■■■□ 3.95
ME3-201ENST00000323418 CCDC88BA6NC98 1476 aa39.56■■■■□ 3.92
ME3-201ENST00000323418 URB2Q14146 1524 aaKnown RBP39.5■■■■□ 3.91
ME3-201ENST00000323418 TOPBP1Q92547 1522 aa39.09■■■■□ 3.85
ME3-201ENST00000323418 DNMBPQ6XZF7 1577 aa39.01■■■■□ 3.84
ME3-201ENST00000323418 IFT140Q96RY7 1462 aa38.98■■■■□ 3.83
ME3-201ENST00000323418 ABCC8Q09428 1581 aa38.97■■■■□ 3.83
ME3-201ENST00000323418 ZNF608Q9ULD9 1512 aaPredicted RBP38.94■■■■□ 3.82
ME3-201ENST00000323418 TARBP1Q13395 1621 aaKnown RBP38.82■■■■□ 3.81
ME3-201ENST00000323418 EIF4G3O43432 1585 aaKnown RBP38.81■■■■□ 3.8
ME3-201ENST00000323418 OSCARQ8IYS5 282 aa38.73■■■■□ 3.79
ME3-201ENST00000323418 POLA1P09884 1462 aaPredicted RBP38.72■■■■□ 3.79
ME3-201ENST00000323418 AQRO60306 1485 aaKnown RBP eCLIP38.55■■■■□ 3.76
ME3-201ENST00000323418 CUX1P39880 1505 aa38.55■■■■□ 3.76
ME3-201ENST00000323418 RAD54L2Q9Y4B4 1467 aa38.53■■■■□ 3.76
ME3-201ENST00000323418 CHD1O14646 1710 aa38.52■■■■□ 3.76
ME3-201ENST00000323418 TRIM41Q8WV44 630 aa38.51■■■■□ 3.76
ME3-201ENST00000323418 FGD5Q6ZNL6 1462 aa38.5■■■■□ 3.75
ME3-201ENST00000323418 SOGA1O94964 1423 aa38.45■■■■□ 3.75
ME3-201ENST00000323418 RIMBP3CA6NJZ7 1639 aa38.44■■■■□ 3.74
ME3-201ENST00000323418 RIMBP3BA6NNM3 1639 aa38.44■■■■□ 3.74
ME3-201ENST00000323418 RIMBP3Q9UFD9 1639 aa38.44■■■■□ 3.74
ME3-201ENST00000323418 WDR97A6NE52 1622 aa38.43■■■■□ 3.74
ME3-201ENST00000323418 SUPT5HO00267 1087 aaKnown RBP38.43■■■■□ 3.74
ME3-201ENST00000323418 TDRD9Q8NDG6 1382 aaKnown RBP38.31■■■■□ 3.72
ME3-201ENST00000323418 ARHGEF11O15085 1522 aa38.29■■■■□ 3.72
ME3-201ENST00000323418 SNAPC4Q5SXM2 1469 aa38.22■■■■□ 3.71
ME3-201ENST00000323418 PBRM1Q86U86 1689 aa38.16■■■■□ 3.7
ME3-201ENST00000323418 MAGI1Q96QZ7 1491 aaPredicted RBP38.14■■■■□ 3.7
ME3-201ENST00000323418 GRIN2BQ13224 1484 aa38.12■■■■□ 3.69
ME3-201ENST00000323418 ABCA5Q8WWZ7 1642 aa38.11■■■■□ 3.69
ME3-201ENST00000323418 ABCA10Q8WWZ4 1543 aa38.1■■■■□ 3.69
ME3-201ENST00000323418 BIVM-ERCC5R4GMW8 1640 aa38.09■■■■□ 3.69
ME3-201ENST00000323418 FBLN2P98095 1184 aa38.06■■■■□ 3.68
ME3-201ENST00000323418 CLASP1Q7Z460 1538 aa38.05■■■■□ 3.68
ME3-201ENST00000323418 GAPVD1Q14C86 1478 aa38.03■■■■□ 3.68
ME3-201ENST00000323418 TOP2BQ02880 1626 aa38.02■■■■□ 3.68
ME3-201ENST00000323418 SYNJ1O43426 1573 aa38■■■■□ 3.67
ME3-201ENST00000323418 SYNJ2O15056 1496 aa37.99■■■■□ 3.67
ME3-201ENST00000323418 ARAP1Q96P48 1450 aa37.95■■■■□ 3.67
ME3-201ENST00000323418 WRNQ14191 1432 aaPredicted RBP eCLIP37.92■■■■□ 3.66
ME3-201ENST00000323418 CHMP7Q8WUX9 453 aaPredicted RBP37.87■■■■□ 3.65
ME3-201ENST00000323418 CYB5RLQ6IPT4 315 aa37.79■■■■□ 3.64
ME3-201ENST00000323418 ADAMTS12P58397 1594 aa37.77■■■■□ 3.64
ME3-201ENST00000323418 GRIN2AQ12879 1464 aa37.67■■■■□ 3.62
ME3-201ENST00000323418 ERICH3Q5RHP9 1530 aa37.62■■■■□ 3.61
ME3-201ENST00000323418 CEP170Q5SW79 1584 aa37.6■■■■□ 3.61
ME3-201ENST00000323418 NUP160Q12769 1436 aa37.56■■■■□ 3.6
ME3-201ENST00000323418 FHAD1B1AJZ9 1412 aa37.54■■■■□ 3.6
ME3-201ENST00000323418 SHROOM2Q13796 1616 aa37.47■■■■□ 3.59
ME3-201ENST00000323418 ERCC6L2Q5T890 1561 aa37.46■■■■□ 3.59
ME3-201ENST00000323418 RUSC2Q8N2Y8 1516 aa37.25■■■■□ 3.55
ME3-201ENST00000323418 TRHP20396 242 aaPredicted RBP37.21■■■■□ 3.55
ME3-201ENST00000323418 CUL7Q14999 1698 aa37.18■■■■□ 3.54
ME3-201ENST00000323418 KIF27Q86VH2 1401 aa37.14■■■■□ 3.54
ME3-201ENST00000323418 IGF1RP08069 1367 aa37.12■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms