Protein–RNA interactions for Protein: Q9NX63

CHCHD3, MICOS complex subunit MIC19, humanhuman

Known RBP Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3Q9NX63 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHCHD3Q9NX63 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.31■□□□□ 0.68
CHCHD3Q9NX63 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 AC104564.3-201ENST00000582367 638 ntBASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHCHD3Q9NX63 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 AC106820.2-201ENST00000563775 3264 ntBASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.29■□□□□ 0.68
CHCHD3Q9NX63 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 MIR6722-201ENST00000617286 78 ntBASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHCHD3Q9NX63 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 FZD10-202ENST00000539839 3282 ntBASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHCHD3Q9NX63 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms