RNA–Protein interactions for RNA: ENST00000616684.4

CDH23-212, Transcript of cadherin related 23, humanhuman

TSL 5 BASIC

Gene CDH23, Length 4,814 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH23-212ENST00000616684 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
CDH23-212ENST00000616684 NISCHQ9Y2I1 1504 aa31.77■■■□□ 2.68
CDH23-212ENST00000616684 SUPT5HO00267 1087 aaKnown RBP31.16■■■□□ 2.58
CDH23-212ENST00000616684 SHROOM4Q9ULL8 1493 aa30.67■■■□□ 2.5
CDH23-212ENST00000616684 EHMT2Q96KQ7 1210 aa29.93■■■□□ 2.38
CDH23-212ENST00000616684 FAM9AQ8IZU1 332 aaPredicted RBP29.33■■■□□ 2.29
CDH23-212ENST00000616684 APLP2Q06481 763 aa29.24■■■□□ 2.27
CDH23-212ENST00000616684 PCGF6Q9BYE7 350 aa29.14■■■□□ 2.26
CDH23-212ENST00000616684 TTBK1Q5TCY1 1321 aaPredicted RBP28.93■■■□□ 2.22
CDH23-212ENST00000616684 PELP1Q8IZL8 1130 aaKnown RBP28.85■■■□□ 2.21
CDH23-212ENST00000616684 TRIM41Q8WV44 630 aa28.84■■■□□ 2.21
CDH23-212ENST00000616684 RANGAP1P46060 587 aaPredicted RBP28.59■■■□□ 2.17
CDH23-212ENST00000616684 ZEB1P37275 1124 aaPredicted RBP28.5■■■□□ 2.15
CDH23-212ENST00000616684 CCER1Q8TC90 406 aaPredicted RBP28.46■■■□□ 2.15
CDH23-212ENST00000616684 UBTFP17480 764 aaKnown RBP28.4■■■□□ 2.14
CDH23-212ENST00000616684 CENPBP07199 599 aaPredicted RBP28.26■■■□□ 2.11
CDH23-212ENST00000616684 ATP1B4Q9UN42 357 aaPredicted RBP28.23■■■□□ 2.11
CDH23-212ENST00000616684 PPARGC1BQ86YN6 1023 aaKnown RBP28.05■■■□□ 2.08
CDH23-212ENST00000616684 TRIM26Q12899 539 aaPredicted RBP27.95■■■□□ 2.06
CDH23-212ENST00000616684 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
CDH23-212ENST00000616684 LOC105371045A0A1W2PR82 267 aa27.85■■■□□ 2.05
CDH23-212ENST00000616684 HRCP23327 699 aa27.74■■■□□ 2.03
CDH23-212ENST00000616684 YTHDC1Q96MU7 727 aaKnown RBP27.73■■■□□ 2.03
CDH23-212ENST00000616684 ERICH6Q7L0X2 663 aa27.61■■■□□ 2.01
CDH23-212ENST00000616684 NEFLP07196 543 aa27.54■■■□□ 2
CDH23-212ENST00000616684 ITGAEP38570 1179 aa27.46■■□□□ 1.99
CDH23-212ENST00000616684 HNRNPUL2Q1KMD3 747 aaKnown RBP27.39■■□□□ 1.98
CDH23-212ENST00000616684 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.22■■□□□ 1.95
CDH23-212ENST00000616684 ABCC9O60706 1549 aa27.11■■□□□ 1.93
CDH23-212ENST00000616684 PABPN1Q86U42 306 aaKnown RBP eCLIP27.03■■□□□ 1.92
CDH23-212ENST00000616684 POLR3GLQ9BT43 218 aa27.02■■□□□ 1.92
CDH23-212ENST00000616684 MYT1Q01538 1121 aa26.96■■□□□ 1.91
CDH23-212ENST00000616684 MYT1LQ9UL68 1186 aa26.93■■□□□ 1.9
CDH23-212ENST00000616684 DIEXFQ68CQ4 756 aaKnown RBP26.9■■□□□ 1.9
CDH23-212ENST00000616684 CNGB1Q14028 1251 aaPredicted RBP26.82■■□□□ 1.88
CDH23-212ENST00000616684 FAM50AQ14320 339 aaKnown RBP26.77■■□□□ 1.88
CDH23-212ENST00000616684 NEUROD1Q13562 356 aa26.55■■□□□ 1.84
CDH23-212ENST00000616684 TRIM52Q96A61 297 aa26.54■■□□□ 1.84
CDH23-212ENST00000616684 DAXXQ9UER7 740 aaPredicted RBP26.54■■□□□ 1.84
CDH23-212ENST00000616684 CSRNP3Q8WYN3 585 aa26.49■■□□□ 1.83
CDH23-212ENST00000616684 SLC4A1APQ9BWU0 796 aaKnown RBP26.36■■□□□ 1.81
CDH23-212ENST00000616684 ZNF316A6NFI3 1004 aaPredicted RBP26.33■■□□□ 1.81
CDH23-212ENST00000616684 ZCCHC6Q5VYS8 1495 aaKnown RBP26.32■■□□□ 1.8
CDH23-212ENST00000616684 GTF3C3Q9Y5Q9 886 aa26.3■■□□□ 1.8
CDH23-212ENST00000616684 P3H3Q8IVL6 736 aa26.26■■□□□ 1.79
CDH23-212ENST00000616684 ANP32CO43423 234 aa26.24■■□□□ 1.79
CDH23-212ENST00000616684 ZNF326Q5BKZ1 582 aaKnown RBP26.23■■□□□ 1.79
CDH23-212ENST00000616684 FBLN2P98095 1184 aa26.21■■□□□ 1.79
CDH23-212ENST00000616684 SCRIBQ14160 1630 aa26.17■■□□□ 1.78
CDH23-212ENST00000616684 BCANQ96GW7 911 aa26.17■■□□□ 1.78
CDH23-212ENST00000616684 CLSPNQ9HAW4 1339 aa26.12■■□□□ 1.77
CDH23-212ENST00000616684 ARID3CA6NKF2 412 aa26.08■■□□□ 1.76
CDH23-212ENST00000616684 DCAF1Q9Y4B6 1507 aa26.02■■□□□ 1.76
CDH23-212ENST00000616684 RTL5Q5HYW3 569 aaPredicted RBP26.02■■□□□ 1.76
CDH23-212ENST00000616684 ACIN1Q9UKV3 1341 aaKnown RBP26■■□□□ 1.75
CDH23-212ENST00000616684 ZNF777Q9ULD5 760 aaPredicted RBP25.87■■□□□ 1.73
CDH23-212ENST00000616684 CDK11AQ9UQ88 783 aaPredicted RBP25.87■■□□□ 1.73
CDH23-212ENST00000616684 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
CDH23-212ENST00000616684 TONSLQ96HA7 1378 aa25.73■■□□□ 1.71
CDH23-212ENST00000616684 DDX10Q13206 875 aaKnown RBP25.64■■□□□ 1.69
CDH23-212ENST00000616684 CANXP27824 592 aaKnown RBP25.59■■□□□ 1.69
CDH23-212ENST00000616684 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
CDH23-212ENST00000616684 MYO15BQ96JP2 1530 aa25.58■■□□□ 1.69
CDH23-212ENST00000616684 ZBTB47Q9UFB7 747 aaPredicted RBP25.55■■□□□ 1.68
CDH23-212ENST00000616684 CHIC2Q9UKJ5 165 aa25.54■■□□□ 1.68
CDH23-212ENST00000616684 CLIP1P30622 1438 aa25.54■■□□□ 1.68
CDH23-212ENST00000616684 FKBP8Q14318 412 aa25.52■■□□□ 1.68
CDH23-212ENST00000616684 HNRNPUQ00839 825 aaKnown RBP eCLIP25.52■■□□□ 1.68
CDH23-212ENST00000616684 NEFMP07197 916 aa25.49■■□□□ 1.67
CDH23-212ENST00000616684 FAM9BQ8IZU0 186 aa25.43■■□□□ 1.66
CDH23-212ENST00000616684 MTUS2Q5JR59 1369 aa25.43■■□□□ 1.66
CDH23-212ENST00000616684 BCL11AQ9H165 835 aa25.42■■□□□ 1.66
CDH23-212ENST00000616684 ANP32AP39687 249 aaKnown RBP25.4■■□□□ 1.66
CDH23-212ENST00000616684 EEA1Q15075 1411 aa25.39■■□□□ 1.65
CDH23-212ENST00000616684 CEP162Q5TB80 1403 aa25.37■■□□□ 1.65
CDH23-212ENST00000616684 SLC24A1O60721 1099 aa25.37■■□□□ 1.65
CDH23-212ENST00000616684 CHGAP10645 457 aaKnown RBP25.36■■□□□ 1.65
CDH23-212ENST00000616684 MIER1Q8N108 512 aa25.36■■□□□ 1.65
CDH23-212ENST00000616684 RB1CC1Q8TDY2 1594 aa25.35■■□□□ 1.65
CDH23-212ENST00000616684 GOLGA3Q08378 1498 aa25.32■■□□□ 1.64
CDH23-212ENST00000616684 TSPY4P0CV99 314 aa25.31■■□□□ 1.64
CDH23-212ENST00000616684 TSPY10P0CW01 314 aa25.31■■□□□ 1.64
CDH23-212ENST00000616684 NPM2Q86SE8 214 aaKnown RBP25.3■■□□□ 1.64
CDH23-212ENST00000616684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.3■■□□□ 1.64
CDH23-212ENST00000616684 WRNQ14191 1432 aaPredicted RBP eCLIP25.28■■□□□ 1.64
CDH23-212ENST00000616684 HIRIP3Q9BW71 556 aaPredicted RBP25.28■■□□□ 1.64
CDH23-212ENST00000616684 SALL2Q9Y467 1007 aaPredicted RBP25.28■■□□□ 1.64
CDH23-212ENST00000616684 TMC1Q8TDI8 760 aa25.27■■□□□ 1.64
CDH23-212ENST00000616684 MRS2Q9HD23 443 aa25.23■■□□□ 1.63
CDH23-212ENST00000616684 NPM1P06748 294 aaKnown RBP eCLIP25.23■■□□□ 1.63
CDH23-212ENST00000616684 KDM2AQ9Y2K7 1162 aa25.22■■□□□ 1.63
CDH23-212ENST00000616684 CHMP7Q8WUX9 453 aaPredicted RBP25.21■■□□□ 1.63
CDH23-212ENST00000616684 ESF1Q9H501 851 aaKnown RBP25.21■■□□□ 1.63
CDH23-212ENST00000616684 RRP7BPQ9NSQ0 103 aa25.2■■□□□ 1.62
CDH23-212ENST00000616684 SCAF1Q9H7N4 1312 aaKnown RBP25.19■■□□□ 1.62
CDH23-212ENST00000616684 STAG3Q9UJ98 1225 aa25.19■■□□□ 1.62
CDH23-212ENST00000616684 TNIKQ9UKE5 1360 aa25.18■■□□□ 1.62
CDH23-212ENST00000616684 NACADO15069 1562 aa25.18■■□□□ 1.62
CDH23-212ENST00000616684 EIF4G2P78344 907 aaKnown RBP eCLIP25.15■■□□□ 1.62
CDH23-212ENST00000616684 CCDC136Q96JN2 1154 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms