RNA–Protein interactions for RNA: ENST00000438661.2

KCNC4-204, Transcript of potassium voltage-gated channel subfamily C member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene KCNC4, Length 2,953 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNC4-204ENST00000438661 NISCHQ9Y2I1 1504 aa35.14■■■■□ 3.22
KCNC4-204ENST00000438661 HRCP23327 699 aa30.57■■■□□ 2.48
KCNC4-204ENST00000438661 SHROOM4Q9ULL8 1493 aa30.51■■■□□ 2.48
KCNC4-204ENST00000438661 SUPT5HO00267 1087 aaKnown RBP30.34■■■□□ 2.45
KCNC4-204ENST00000438661 PPARGC1BQ86YN6 1023 aaKnown RBP30.24■■■□□ 2.43
KCNC4-204ENST00000438661 PCGF6Q9BYE7 350 aa30.19■■■□□ 2.42
KCNC4-204ENST00000438661 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
KCNC4-204ENST00000438661 MYO15BQ96JP2 1530 aa29.71■■■□□ 2.35
KCNC4-204ENST00000438661 CHIC1Q5VXU3 224 aa29.58■■■□□ 2.33
KCNC4-204ENST00000438661 CCDC180Q9P1Z9 1646 aa29.54■■■□□ 2.32
KCNC4-204ENST00000438661 DCAF8L2P0C7V8 631 aa29.45■■■□□ 2.31
KCNC4-204ENST00000438661 PELP1Q8IZL8 1130 aaKnown RBP29.44■■■□□ 2.3
KCNC4-204ENST00000438661 LOC105371045A0A1W2PR82 267 aa29.16■■■□□ 2.26
KCNC4-204ENST00000438661 SCAF1Q9H7N4 1312 aaKnown RBP29.07■■■□□ 2.24
KCNC4-204ENST00000438661 TRIM26Q12899 539 aaPredicted RBP28.94■■■□□ 2.22
KCNC4-204ENST00000438661 DCAF1Q9Y4B6 1507 aa28.86■■■□□ 2.21
KCNC4-204ENST00000438661 ZEB1P37275 1124 aaPredicted RBP28.62■■■□□ 2.17
KCNC4-204ENST00000438661 NEUROD1Q13562 356 aa28.3■■■□□ 2.12
KCNC4-204ENST00000438661 ACIN1Q9UKV3 1341 aaKnown RBP28.27■■■□□ 2.12
KCNC4-204ENST00000438661 EHMT2Q96KQ7 1210 aa28.26■■■□□ 2.12
KCNC4-204ENST00000438661 MYT1Q01538 1121 aa28.23■■■□□ 2.11
KCNC4-204ENST00000438661 GTF3C3Q9Y5Q9 886 aa28.2■■■□□ 2.1
KCNC4-204ENST00000438661 FAM9AQ8IZU1 332 aaPredicted RBP28.15■■■□□ 2.1
KCNC4-204ENST00000438661 ABCC9O60706 1549 aa28.1■■■□□ 2.09
KCNC4-204ENST00000438661 SCRIBQ14160 1630 aa28.01■■■□□ 2.07
KCNC4-204ENST00000438661 RSF1Q96T23 1441 aaPredicted RBP28■■■□□ 2.07
KCNC4-204ENST00000438661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.96■■■□□ 2.07
KCNC4-204ENST00000438661 CENPBP07199 599 aaPredicted RBP27.94■■■□□ 2.06
KCNC4-204ENST00000438661 TRIM41Q8WV44 630 aa27.9■■■□□ 2.06
KCNC4-204ENST00000438661 CCER1Q8TC90 406 aaPredicted RBP27.87■■■□□ 2.05
KCNC4-204ENST00000438661 DIEXFQ68CQ4 756 aaKnown RBP27.85■■■□□ 2.05
KCNC4-204ENST00000438661 RB1CC1Q8TDY2 1594 aa27.75■■■□□ 2.03
KCNC4-204ENST00000438661 YTHDC1Q96MU7 727 aaKnown RBP27.68■■■□□ 2.02
KCNC4-204ENST00000438661 TTBK1Q5TCY1 1321 aaPredicted RBP27.56■■■□□ 2
KCNC4-204ENST00000438661 CECR2Q9BXF3 1484 aa27.53■■■□□ 2
KCNC4-204ENST00000438661 MROH2BQ7Z745 1585 aa27.41■■□□□ 1.98
KCNC4-204ENST00000438661 NACADO15069 1562 aa27.31■■□□□ 1.96
KCNC4-204ENST00000438661 WIZO95785 1651 aa27.29■■□□□ 1.96
KCNC4-204ENST00000438661 ZNF316A6NFI3 1004 aaPredicted RBP27.21■■□□□ 1.95
KCNC4-204ENST00000438661 MIER1Q8N108 512 aa27.15■■□□□ 1.94
KCNC4-204ENST00000438661 BAZ1AQ9NRL2 1556 aaPredicted RBP27■■□□□ 1.91
KCNC4-204ENST00000438661 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
KCNC4-204ENST00000438661 ABCC8Q09428 1581 aa26.85■■□□□ 1.89
KCNC4-204ENST00000438661 CCDC88BA6NC98 1476 aa26.81■■□□□ 1.88
KCNC4-204ENST00000438661 HNRNPUL2Q1KMD3 747 aaKnown RBP26.74■■□□□ 1.87
KCNC4-204ENST00000438661 TOP2AP11388 1531 aaKnown RBP26.74■■□□□ 1.87
KCNC4-204ENST00000438661 BCL11AQ9H165 835 aa26.73■■□□□ 1.87
KCNC4-204ENST00000438661 SUPT16HQ9Y5B9 1047 aaKnown RBP26.7■■□□□ 1.87
KCNC4-204ENST00000438661 SOGA1O94964 1423 aa26.69■■□□□ 1.86
KCNC4-204ENST00000438661 SMARCA4P51532 1647 aa26.67■■□□□ 1.86
KCNC4-204ENST00000438661 ANP32EQ9BTT0 268 aa26.67■■□□□ 1.86
KCNC4-204ENST00000438661 SMARCA2P51531 1590 aa26.65■■□□□ 1.86
KCNC4-204ENST00000438661 CEP162Q5TB80 1403 aa26.65■■□□□ 1.86
KCNC4-204ENST00000438661 TSHZ2Q9NRE2 1034 aa26.61■■□□□ 1.85
KCNC4-204ENST00000438661 WRNQ14191 1432 aaPredicted RBP eCLIP26.59■■□□□ 1.85
KCNC4-204ENST00000438661 UBTFP17480 764 aaKnown RBP26.58■■□□□ 1.84
KCNC4-204ENST00000438661 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
KCNC4-204ENST00000438661 CSRNP3Q8WYN3 585 aa26.55■■□□□ 1.84
KCNC4-204ENST00000438661 TNIKQ9UKE5 1360 aa26.53■■□□□ 1.84
KCNC4-204ENST00000438661 UNC13AQ9UPW8 1703 aa26.48■■□□□ 1.83
KCNC4-204ENST00000438661 PABPN1Q86U42 306 aaKnown RBP eCLIP26.45■■□□□ 1.82
KCNC4-204ENST00000438661 BCANQ96GW7 911 aa26.43■■□□□ 1.82
KCNC4-204ENST00000438661 EEA1Q15075 1411 aa26.38■■□□□ 1.81
KCNC4-204ENST00000438661 CLSPNQ9HAW4 1339 aa26.31■■□□□ 1.8
KCNC4-204ENST00000438661 GOLGA3Q08378 1498 aa26.31■■□□□ 1.8
KCNC4-204ENST00000438661 RANGAP1P46060 587 aaPredicted RBP26.22■■□□□ 1.79
KCNC4-204ENST00000438661 KCNH8Q96L42 1107 aa26.17■■□□□ 1.78
KCNC4-204ENST00000438661 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
KCNC4-204ENST00000438661 SYNJ1O43426 1573 aa26.14■■□□□ 1.77
KCNC4-204ENST00000438661 FKBP8Q14318 412 aa26.13■■□□□ 1.77
KCNC4-204ENST00000438661 APLP2Q06481 763 aa26.12■■□□□ 1.77
KCNC4-204ENST00000438661 CEP164Q9UPV0 1460 aa26.11■■□□□ 1.77
KCNC4-204ENST00000438661 CLIP1P30622 1438 aa26.09■■□□□ 1.77
KCNC4-204ENST00000438661 PEG3Q9GZU2 1588 aa26.04■■□□□ 1.76
KCNC4-204ENST00000438661 RBM19Q9Y4C8 960 aaKnown RBP26.01■■□□□ 1.76
KCNC4-204ENST00000438661 KIF21BO75037 1637 aa26.01■■□□□ 1.75
KCNC4-204ENST00000438661 ITGAEP38570 1179 aa26■■□□□ 1.75
KCNC4-204ENST00000438661 RAPGEF2Q9Y4G8 1499 aa25.98■■□□□ 1.75
KCNC4-204ENST00000438661 VPS8Q8N3P4 1428 aa25.97■■□□□ 1.75
KCNC4-204ENST00000438661 ATAD2BQ9ULI0 1458 aa25.96■■□□□ 1.75
KCNC4-204ENST00000438661 BAZ1BQ9UIG0 1483 aaKnown RBP25.92■■□□□ 1.74
KCNC4-204ENST00000438661 NEFLP07196 543 aa25.86■■□□□ 1.73
KCNC4-204ENST00000438661 DHX57Q6P158 1386 aaKnown RBP25.85■■□□□ 1.73
KCNC4-204ENST00000438661 TRIM52Q96A61 297 aa25.77■■□□□ 1.72
KCNC4-204ENST00000438661 MSH5O43196 834 aa25.77■■□□□ 1.72
KCNC4-204ENST00000438661 DDX10Q13206 875 aaKnown RBP25.76■■□□□ 1.71
KCNC4-204ENST00000438661 ERICH6Q7L0X2 663 aa25.71■■□□□ 1.71
KCNC4-204ENST00000438661 TOP2BQ02880 1626 aa25.71■■□□□ 1.71
KCNC4-204ENST00000438661 KANK4Q5T7N3 995 aaPredicted RBP25.67■■□□□ 1.7
KCNC4-204ENST00000438661 HIRIP3Q9BW71 556 aaPredicted RBP25.61■■□□□ 1.69
KCNC4-204ENST00000438661 ARAP1Q96P48 1450 aa25.6■■□□□ 1.69
KCNC4-204ENST00000438661 PRXQ9BXM0 1461 aa25.59■■□□□ 1.69
KCNC4-204ENST00000438661 BIVM-ERCC5R4GMW8 1640 aa25.56■■□□□ 1.68
KCNC4-204ENST00000438661 IRX6P78412 446 aaPredicted RBP25.56■■□□□ 1.68
KCNC4-204ENST00000438661 PRKCSHP14314 528 aaPredicted RBP25.56■■□□□ 1.68
KCNC4-204ENST00000438661 ERICH3Q5RHP9 1530 aa25.53■■□□□ 1.68
KCNC4-204ENST00000438661 CUX1P39880 1505 aa25.47■■□□□ 1.67
KCNC4-204ENST00000438661 CDK11AQ9UQ88 783 aaPredicted RBP25.45■■□□□ 1.66
KCNC4-204ENST00000438661 KIF27Q86VH2 1401 aa25.43■■□□□ 1.66
KCNC4-204ENST00000438661 SIN3AQ96ST3 1273 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms