Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM39Q9HCM9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
TRIM39Q9HCM9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TRIM39Q9HCM9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
TRIM39Q9HCM9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TRIM39Q9HCM9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
TRIM39Q9HCM9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
TRIM39Q9HCM9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
TRIM39Q9HCM9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.39■■□□□ 1.82
TRIM39Q9HCM9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.39■■□□□ 1.81
TRIM39Q9HCM9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRIM39Q9HCM9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRIM39Q9HCM9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRIM39Q9HCM9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TRIM39Q9HCM9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
TRIM39Q9HCM9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
TRIM39Q9HCM9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.36■■□□□ 1.81
TRIM39Q9HCM9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.36■■□□□ 1.81
TRIM39Q9HCM9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
TRIM39Q9HCM9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.35■■□□□ 1.81
TRIM39Q9HCM9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
TRIM39Q9HCM9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
TRIM39Q9HCM9 AC087741.3-201ENST00000624270 1347 ntBASIC26.35■■□□□ 1.81
TRIM39Q9HCM9 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.35■■□□□ 1.81
TRIM39Q9HCM9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC26.34■■□□□ 1.81
TRIM39Q9HCM9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.34■■□□□ 1.81
TRIM39Q9HCM9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TRIM39Q9HCM9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
TRIM39Q9HCM9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM39Q9HCM9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM39Q9HCM9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM39Q9HCM9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.32■■□□□ 1.8
TRIM39Q9HCM9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM39Q9HCM9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM39Q9HCM9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM39Q9HCM9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
TRIM39Q9HCM9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.3■■□□□ 1.8
TRIM39Q9HCM9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM39Q9HCM9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
TRIM39Q9HCM9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM39Q9HCM9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRIM39Q9HCM9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRIM39Q9HCM9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
TRIM39Q9HCM9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRIM39Q9HCM9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.26■■□□□ 1.79
TRIM39Q9HCM9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.26■■□□□ 1.79
TRIM39Q9HCM9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.25■■□□□ 1.79
TRIM39Q9HCM9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TRIM39Q9HCM9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TRIM39Q9HCM9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.25■■□□□ 1.79
TRIM39Q9HCM9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
TRIM39Q9HCM9 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.24■■□□□ 1.79
TRIM39Q9HCM9 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.24■■□□□ 1.79
TRIM39Q9HCM9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
TRIM39Q9HCM9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TRIM39Q9HCM9 AC044849.2-201ENST00000606596 710 ntBASIC26.23■■□□□ 1.79
TRIM39Q9HCM9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.22■■□□□ 1.79
TRIM39Q9HCM9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.22■■□□□ 1.79
TRIM39Q9HCM9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
TRIM39Q9HCM9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
TRIM39Q9HCM9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
TRIM39Q9HCM9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
TRIM39Q9HCM9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
TRIM39Q9HCM9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.2■■□□□ 1.78
TRIM39Q9HCM9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.2■■□□□ 1.78
TRIM39Q9HCM9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
TRIM39Q9HCM9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
TRIM39Q9HCM9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
TRIM39Q9HCM9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
TRIM39Q9HCM9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.18■■□□□ 1.78
TRIM39Q9HCM9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
TRIM39Q9HCM9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
TRIM39Q9HCM9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
TRIM39Q9HCM9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TRIM39Q9HCM9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.16■■□□□ 1.78
TRIM39Q9HCM9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TRIM39Q9HCM9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
TRIM39Q9HCM9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
TRIM39Q9HCM9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
TRIM39Q9HCM9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
TRIM39Q9HCM9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
TRIM39Q9HCM9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
TRIM39Q9HCM9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
TRIM39Q9HCM9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
TRIM39Q9HCM9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.12■■□□□ 1.77
TRIM39Q9HCM9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
TRIM39Q9HCM9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TRIM39Q9HCM9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.12■■□□□ 1.77
TRIM39Q9HCM9 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TRIM39Q9HCM9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TRIM39Q9HCM9 AC108673.1-201ENST00000510422 1159 ntBASIC26.11■■□□□ 1.77
TRIM39Q9HCM9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TRIM39Q9HCM9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TRIM39Q9HCM9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
TRIM39Q9HCM9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.1■■□□□ 1.77
TRIM39Q9HCM9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
TRIM39Q9HCM9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.09■■□□□ 1.77
TRIM39Q9HCM9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
TRIM39Q9HCM9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
TRIM39Q9HCM9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms