Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
UPF3AQ9H1J1 MIR639-201ENST00000384974 98 ntBASIC30.25■■■□□ 2.43
UPF3AQ9H1J1 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.24■■■□□ 2.43
UPF3AQ9H1J1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
UPF3AQ9H1J1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.23■■■□□ 2.43
UPF3AQ9H1J1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
UPF3AQ9H1J1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.22■■■□□ 2.43
UPF3AQ9H1J1 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
UPF3AQ9H1J1 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
UPF3AQ9H1J1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.2■■■□□ 2.43
UPF3AQ9H1J1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.2■■■□□ 2.43
UPF3AQ9H1J1 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.2■■■□□ 2.43
UPF3AQ9H1J1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
UPF3AQ9H1J1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.18■■■□□ 2.42
UPF3AQ9H1J1 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
UPF3AQ9H1J1 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
UPF3AQ9H1J1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
UPF3AQ9H1J1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.16■■■□□ 2.42
UPF3AQ9H1J1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
UPF3AQ9H1J1 MIR3648-2-201ENST00000581792 180 ntBASIC30.15■■■□□ 2.42
UPF3AQ9H1J1 MIR3648-1-201ENST00000615959 180 ntBASIC30.15■■■□□ 2.42
UPF3AQ9H1J1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
UPF3AQ9H1J1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
UPF3AQ9H1J1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.12■■■□□ 2.41
UPF3AQ9H1J1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
UPF3AQ9H1J1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
UPF3AQ9H1J1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
UPF3AQ9H1J1 AC016575.1-201ENST00000607026 382 ntBASIC30.11■■■□□ 2.41
UPF3AQ9H1J1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.11■■■□□ 2.41
UPF3AQ9H1J1 LINC01971-201ENST00000617888 1048 ntBASIC30.1■■■□□ 2.41
UPF3AQ9H1J1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.09■■■□□ 2.41
UPF3AQ9H1J1 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
UPF3AQ9H1J1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.08■■■□□ 2.41
UPF3AQ9H1J1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
UPF3AQ9H1J1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.07■■■□□ 2.4
UPF3AQ9H1J1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
UPF3AQ9H1J1 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
UPF3AQ9H1J1 DUX4L11-201ENST00000611504 1267 ntBASIC30.07■■■□□ 2.4
UPF3AQ9H1J1 DUX4L12-201ENST00000614593 1267 ntBASIC30.07■■■□□ 2.4
UPF3AQ9H1J1 DUX4L14-201ENST00000621227 1267 ntBASIC30.07■■■□□ 2.4
UPF3AQ9H1J1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
UPF3AQ9H1J1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
UPF3AQ9H1J1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
UPF3AQ9H1J1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
UPF3AQ9H1J1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.04■■■□□ 2.4
UPF3AQ9H1J1 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
UPF3AQ9H1J1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.04■■■□□ 2.4
UPF3AQ9H1J1 CR559946.2-201ENST00000623684 991 ntBASIC30.04■■■□□ 2.4
UPF3AQ9H1J1 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
UPF3AQ9H1J1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
UPF3AQ9H1J1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
UPF3AQ9H1J1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.02■■■□□ 2.4
UPF3AQ9H1J1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.02■■■□□ 2.4
UPF3AQ9H1J1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
UPF3AQ9H1J1 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
UPF3AQ9H1J1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
UPF3AQ9H1J1 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30■■■□□ 2.39
UPF3AQ9H1J1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
UPF3AQ9H1J1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30■■■□□ 2.39
UPF3AQ9H1J1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.99■■■□□ 2.39
UPF3AQ9H1J1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.98■■■□□ 2.39
UPF3AQ9H1J1 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.97■■■□□ 2.39
UPF3AQ9H1J1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
UPF3AQ9H1J1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
UPF3AQ9H1J1 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.94■■■□□ 2.38
UPF3AQ9H1J1 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.93■■■□□ 2.38
UPF3AQ9H1J1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.93■■■□□ 2.38
UPF3AQ9H1J1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.93■■■□□ 2.38
UPF3AQ9H1J1 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
UPF3AQ9H1J1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
UPF3AQ9H1J1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
UPF3AQ9H1J1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.92■■■□□ 2.38
UPF3AQ9H1J1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
UPF3AQ9H1J1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.91■■■□□ 2.38
UPF3AQ9H1J1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.91■■■□□ 2.38
UPF3AQ9H1J1 HSD17B1P1-201ENST00000590052 955 ntBASIC29.91■■■□□ 2.38
UPF3AQ9H1J1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
UPF3AQ9H1J1 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC29.89■■■□□ 2.38
UPF3AQ9H1J1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
UPF3AQ9H1J1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
UPF3AQ9H1J1 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
UPF3AQ9H1J1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.86■■■□□ 2.37
UPF3AQ9H1J1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
UPF3AQ9H1J1 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
UPF3AQ9H1J1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
UPF3AQ9H1J1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.84■■■□□ 2.37
UPF3AQ9H1J1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
UPF3AQ9H1J1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
UPF3AQ9H1J1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
UPF3AQ9H1J1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
UPF3AQ9H1J1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.82■■■□□ 2.36
UPF3AQ9H1J1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.82■■■□□ 2.36
UPF3AQ9H1J1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.82■■■□□ 2.36
UPF3AQ9H1J1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.81■■■□□ 2.36
UPF3AQ9H1J1 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
UPF3AQ9H1J1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
UPF3AQ9H1J1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
UPF3AQ9H1J1 AC120057.4-201ENST00000624722 1615 ntBASIC29.78■■■□□ 2.36
UPF3AQ9H1J1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
UPF3AQ9H1J1 DUX4L13-201ENST00000554103 1267 ntBASIC29.78■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms