Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 CAB5YDR196C 726 nt10.41□□□□□ -0.74
SSL2Q00578 RSC8YFR037C 1674 nt10.41□□□□□ -0.74
SSL2Q00578 BET2YPR176C 978 nt10.4□□□□□ -0.74
SSL2Q00578 HEM13YDR044W 987 nt10.39□□□□□ -0.75
SSL2Q00578 DLD2YDL178W 1593 nt10.39□□□□□ -0.75
SSL2Q00578 SGA1YIL099W 1650 nt10.38□□□□□ -0.75
SSL2Q00578 KES1YPL145C 1305 nt10.37□□□□□ -0.75
SSL2Q00578 TSC10YBR265W 963 nt10.34□□□□□ -0.75
SSL2Q00578 YGR012WYGR012W 1182 nt10.33□□□□□ -0.76
SSL2Q00578 SSN3YPL042C 1668 nt10.33□□□□□ -0.76
SSL2Q00578 BNI5YNL166C 1347 nt10.33□□□□□ -0.76
SSL2Q00578 YMR209CYMR209C 1374 nt10.32□□□□□ -0.76
SSL2Q00578 FCY21YER060W 1587 nt10.3□□□□□ -0.76
SSL2Q00578 TAT2YOL020W 1779 nt10.27□□□□□ -0.77
SSL2Q00578 FUB1YCR076C 753 nt10.27□□□□□ -0.77
SSL2Q00578 OXA1YER154W 1209 nt10.27□□□□□ -0.77
SSL2Q00578 RPM1RPM1 483 nt10.27□□□□□ -0.77
SSL2Q00578 MAE1YKL029C 2010 nt10.26□□□□□ -0.77
SSL2Q00578 SEC61YLR378C 1443 nt10.26□□□□□ -0.77
SSL2Q00578 CSM1YCR086W 573 nt10.26□□□□□ -0.77
SSL2Q00578 SAM2YDR502C 1155 nt10.26□□□□□ -0.77
SSL2Q00578 FRE6YLL051C 2139 nt10.25□□□□□ -0.77
SSL2Q00578 MSC1YML128C 1542 nt10.25□□□□□ -0.77
SSL2Q00578 HIS2YFR025C 1008 nt10.25□□□□□ -0.77
SSL2Q00578 QDR2YIL121W 1629 nt10.25□□□□□ -0.77
SSL2Q00578 PHO23YNL097C 993 nt10.24□□□□□ -0.77
SSL2Q00578 MRS6YOR370C 1812 nt10.23□□□□□ -0.77
SSL2Q00578 SDH5YOL071W 489 nt10.23□□□□□ -0.77
SSL2Q00578 SAM3YPL274W 1764 nt10.23□□□□□ -0.77
SSL2Q00578 GID8YMR135C 1368 nt10.23□□□□□ -0.77
SSL2Q00578 VPS62YGR141W 1404 nt10.21□□□□□ -0.78
SSL2Q00578 YER188WYER188W 720 nt10.2□□□□□ -0.78
SSL2Q00578 YHR219WYHR219W 1875 nt10.19□□□□□ -0.78
SSL2Q00578 YDL086WYDL086W 822 nt10.19□□□□□ -0.78
SSL2Q00578 PRY1YJL079C 900 nt10.19□□□□□ -0.78
SSL2Q00578 YDR455CYDR455C 309 nt10.17□□□□□ -0.78
SSL2Q00578 SSL2YIL143C 2532 nt10.16□□□□□ -0.78
SSL2Q00578 ACO2YJL200C 2370 nt10.15□□□□□ -0.78
SSL2Q00578 APT2YDR441C 546 nt10.15□□□□□ -0.78
SSL2Q00578 SMM1YNR015W 1155 nt10.15□□□□□ -0.78
SSL2Q00578 ODC1YPL134C 933 nt10.15□□□□□ -0.78
SSL2Q00578 DIG1YPL049C 1359 nt10.14□□□□□ -0.79
SSL2Q00578 YKL133CYKL133C 1392 nt10.14□□□□□ -0.79
SSL2Q00578 AIM1YAL046C 357 nt10.12□□□□□ -0.79
SSL2Q00578 OSH7YHR001W 1314 nt10.1□□□□□ -0.79
SSL2Q00578 SOL2YCR073W-A 948 nt10.1□□□□□ -0.79
SSL2Q00578 RAD23YEL037C 1197 nt10.1□□□□□ -0.79
SSL2Q00578 YLR437C-AYLR437C-A 228 nt10.1□□□□□ -0.79
SSL2Q00578 YPL222C-AYPL222C-A 246 nt10.1□□□□□ -0.79
SSL2Q00578 GND1YHR183W 1470 nt10.07□□□□□ -0.8
SSL2Q00578 RIB3YDR487C 627 nt10.07□□□□□ -0.8
SSL2Q00578 LSR1LSR1 1175 nt10.07□□□□□ -0.8
SSL2Q00578 EAF3YPR023C 1206 nt10.07□□□□□ -0.8
SSL2Q00578 DLD3YEL071W 1491 nt10.06□□□□□ -0.8
SSL2Q00578 YJL055WYJL055W 738 nt10.06□□□□□ -0.8
SSL2Q00578 RAS2YNL098C 969 nt10.06□□□□□ -0.8
SSL2Q00578 ITR2YOL103W 1830 nt10.05□□□□□ -0.8
SSL2Q00578 DMA2YNL116W 1569 nt10.04□□□□□ -0.8
SSL2Q00578 GLR1YPL091W 1452 nt10.04□□□□□ -0.8
SSL2Q00578 LOT5YKL183W 921 nt10.03□□□□□ -0.8
SSL2Q00578 PSD1YNL169C 1503 nt10.02□□□□□ -0.8
SSL2Q00578 YJL118WYJL118W 660 nt10.02□□□□□ -0.81
SSL2Q00578 TPS1YBR126C 1488 nt10.02□□□□□ -0.81
SSL2Q00578 YHR218WYHR218W 1812 nt10.02□□□□□ -0.81
SSL2Q00578 SAC7YDR389W 1965 nt10.01□□□□□ -0.81
SSL2Q00578 NUC1YJL208C 990 nt10□□□□□ -0.81
SSL2Q00578 GPN2YOR262W 1044 nt10□□□□□ -0.81
SSL2Q00578 DDI1YER143W 1287 nt9.99□□□□□ -0.81
SSL2Q00578 OYE2YHR179W 1203 nt9.98□□□□□ -0.81
SSL2Q00578 RPT5YOR117W 1305 nt9.98□□□□□ -0.81
SSL2Q00578 ASP3-1YLR155C 1089 nt9.97□□□□□ -0.81
SSL2Q00578 ASP3-2YLR157C 1089 nt9.97□□□□□ -0.81
SSL2Q00578 ASP3-3YLR158C 1089 nt9.97□□□□□ -0.81
SSL2Q00578 ASP3-4YLR160C 1089 nt9.97□□□□□ -0.81
SSL2Q00578 YMR244WYMR244W 1068 nt9.97□□□□□ -0.81
SSL2Q00578 LSB5YCL034W 1065 nt9.97□□□□□ -0.81
SSL2Q00578 YLR046CYLR046C 813 nt9.96□□□□□ -0.82
SSL2Q00578 YLR111WYLR111W 333 nt9.96□□□□□ -0.82
SSL2Q00578 HXT12YIL170W 1374 nt9.96□□□□□ -0.82
SSL2Q00578 ERG13YML126C 1476 nt9.96□□□□□ -0.82
SSL2Q00578 GAL3YDR009W 1563 nt9.96□□□□□ -0.82
SSL2Q00578 LSM5YER146W 282 nt9.94□□□□□ -0.82
SSL2Q00578 HXT10YFL011W 1641 nt9.93□□□□□ -0.82
SSL2Q00578 MDM35YKL053C-A 261 nt9.93□□□□□ -0.82
SSL2Q00578 CWP2YKL096W-A 279 nt9.93□□□□□ -0.82
SSL2Q00578 TMA23YMR269W 636 nt9.93□□□□□ -0.82
SSL2Q00578 YHL008CYHL008C 1884 nt9.92□□□□□ -0.82
SSL2Q00578 RIB2YOL066C 1776 nt9.91□□□□□ -0.82
SSL2Q00578 LSB3YFR024C-A 1380 nt9.91□□□□□ -0.82
SSL2Q00578 VRG4YGL225W 1014 nt9.91□□□□□ -0.82
SSL2Q00578 ENT4YLL038C 744 nt9.89□□□□□ -0.83
SSL2Q00578 DPL1YDR294C 1770 nt9.88□□□□□ -0.83
SSL2Q00578 RPD3YNL330C 1302 nt9.87□□□□□ -0.83
SSL2Q00578 MET2YNL277W 1461 nt9.87□□□□□ -0.83
SSL2Q00578 SFP1YLR403W 2052 nt9.84□□□□□ -0.83
SSL2Q00578 IMO32YGR031W 1029 nt9.83□□□□□ -0.84
SSL2Q00578 VMA11YPL234C 495 nt9.83□□□□□ -0.84
SSL2Q00578 TIM44YIL022W 1296 nt9.82□□□□□ -0.84
SSL2Q00578 YNR029CYNR029C 1290 nt9.82□□□□□ -0.84
SSL2Q00578 CYT1YOR065W 930 nt9.82□□□□□ -0.84
Retrieved 100 of 7,029 protein–RNA pairs in 13.8 ms