RNA–Protein interactions for RNA: YIL143C

SSL2, Transcript of Component of RNA polymerase transcription factor TFIIH holoenzyme, yeastyeast

Gene SSL2, Length 2,532 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL2YIL143C SGS1P35187 1447 aa14.46□□□□□ -0.1
SSL2YIL143C SPA2P23201 1466 aaKnown RBP14.18□□□□□ -0.14
SSL2YIL143C SSN2P38931 1420 aa14.06□□□□□ -0.16
SSL2YIL143C INO80P53115 1489 aa13.95□□□□□ -0.18
SSL2YIL143C DRS1P32892 752 aaKnown RBP13.65□□□□□ -0.22
SSL2YIL143C TCB3Q03640 1545 aaKnown RBP13.61□□□□□ -0.23
SSL2YIL143C TY1B-DR4Q07793 1604 aa13.43□□□□□ -0.26
SSL2YIL143C RQC2Q12532 1038 aaKnown RBP13.37□□□□□ -0.27
SSL2YIL143C HSL1P34244 1518 aa13.32□□□□□ -0.28
SSL2YIL143C SPT6P23615 1451 aaKnown RBP13.26□□□□□ -0.29
SSL2YIL143C XRN1P22147 1528 aaKnown RBP13.12□□□□□ -0.31
SSL2YIL143C HIR3P47171 1648 aa13.12□□□□□ -0.31
SSL2YIL143C SKI3P17883 1432 aaKnown RBP13.08□□□□□ -0.32
SSL2YIL143C REV3P14284 1504 aa12.96□□□□□ -0.33
SSL2YIL143C SWR1Q05471 1514 aa12.92□□□□□ -0.34
SSL2YIL143C THO2P53552 1597 aaKnown RBP12.91□□□□□ -0.34
SSL2YIL143C MON2P48563 1636 aaPredicted RBP12.91□□□□□ -0.34
SSL2YIL143C MMS22Q06164 1454 aa12.88□□□□□ -0.35
SSL2YIL143C TAF2P23255 1407 aa12.86□□□□□ -0.35
SSL2YIL143C SIN3P22579 1536 aa12.85□□□□□ -0.35
SSL2YIL143C SSK2P53599 1579 aa12.84□□□□□ -0.35
SSL2YIL143C CHD1P32657 1468 aa12.83□□□□□ -0.36
SSL2YIL143C ESP1Q03018 1630 aa12.72□□□□□ -0.37
SSL2YIL143C TFA1P36100 482 aa12.69□□□□□ -0.38
SSL2YIL143C MYO2P19524 1574 aaKnown RBP12.69□□□□□ -0.38
SSL2YIL143C TAF7Q05021 590 aa12.62□□□□□ -0.39
SSL2YIL143C STU1P38198 1513 aa12.61□□□□□ -0.39
SSL2YIL143C RSE1Q04693 1361 aaKnown RBP12.6□□□□□ -0.39
SSL2YIL143C POL1P13382 1468 aa12.59□□□□□ -0.39
SSL2YIL143C SAS10Q12136 610 aaPredicted RBP12.57□□□□□ -0.4
SSL2YIL143C BPT1P14772 1559 aa12.54□□□□□ -0.4
SSL2YIL143C YTA7P40340 1379 aa12.52□□□□□ -0.41
SSL2YIL143C UFD4P33202 1483 aa12.5□□□□□ -0.41
SSL2YIL143C ATG2P53855 1592 aa12.48□□□□□ -0.41
SSL2YIL143C BUD4P47136 1447 aa12.47□□□□□ -0.41
SSL2YIL143C YPK9Q12697 1472 aa12.46□□□□□ -0.42
SSL2YIL143C TRM732Q03496 1420 aa12.46□□□□□ -0.42
SSL2YIL143C RKR1Q04781 1562 aa12.41□□□□□ -0.42
SSL2YIL143C SCC2Q04002 1493 aa12.41□□□□□ -0.42
SSL2YIL143C ECM5Q03214 1411 aa12.37□□□□□ -0.43
SSL2YIL143C YOR1P53049 1477 aa12.37□□□□□ -0.43
SSL2YIL143C DNA2P38859 1522 aa12.36□□□□□ -0.43
SSL2YIL143C IKI3Q06706 1349 aaKnown RBP12.35□□□□□ -0.43
SSL2YIL143C MYO4P32492 1471 aa12.33□□□□□ -0.44
SSL2YIL143C KOG1P38873 1557 aa12.32□□□□□ -0.44
SSL2YIL143C NSR1P27476 414 aaKnown RBP RIP-Chip data12.3□□□□□ -0.44not detected
SSL2YIL143C PEP1P32319 1579 aa12.24□□□□□ -0.45
SSL2YIL143C SNQ2P32568 1501 aaKnown RBP12.23□□□□□ -0.45
SSL2YIL143C RPO31P04051 1460 aa12.23□□□□□ -0.45
SSL2YIL143C SMC4Q12267 1418 aa12.21□□□□□ -0.45
SSL2YIL143C STH1P32597 1359 aa12.21□□□□□ -0.45
SSL2YIL143C NOP2P40991 618 aaKnown RBP12.21□□□□□ -0.45
SSL2YIL143C TOP2P06786 1428 aaKnown RBP12.21□□□□□ -0.46
SSL2YIL143C SSM4P40318 1319 aa12.21□□□□□ -0.46
SSL2YIL143C SPP41P38904 1435 aa12.19□□□□□ -0.46
SSL2YIL143C MDS3P53094 1487 aa12.19□□□□□ -0.46
SSL2YIL143C MLP2P40457 1679 aa12.18□□□□□ -0.46
SSL2YIL143C NUP170P38181 1502 aa12.17□□□□□ -0.46
SSL2YIL143C YCF1P39109 1515 aaKnown RBP12.16□□□□□ -0.46
SSL2YIL143C TY2B-LR1P0C2J3 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-FP0CX63 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-GR2P0CX64 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-CP25384 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-DR2Q03494 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY1B-DR1Q03855 1755 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-DR3Q07791 1770 aaKnown RBP12.15□□□□□ -0.46
SSL2YIL143C TY2B-OR1Q12113 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-DR1Q12472 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY2B-OR2Q12501 1770 aa12.15□□□□□ -0.46
SSL2YIL143C TY1B-DR3Q99231 1755 aa12.15□□□□□ -0.46
SSL2YIL143C IFH1P39520 1085 aa12.13□□□□□ -0.47
SSL2YIL143C PDR15Q04182 1529 aaKnown RBP12.12□□□□□ -0.47
SSL2YIL143C GEA1P47102 1408 aaPredicted RBP12.07□□□□□ -0.48
SSL2YIL143C TY2B-BQ12491 1770 aa12.06□□□□□ -0.48
SSL2YIL143C ULS1Q08562 1619 aa12.03□□□□□ -0.48
SSL2YIL143C PAN1P32521 1480 aa12.03□□□□□ -0.48
SSL2YIL143C TSC11P40061 1430 aa12□□□□□ -0.49
SSL2YIL143C POL5P39985 1022 aaKnown RBP11.97□□□□□ -0.49
SSL2YIL143C RTT106P40161 455 aa11.94□□□□□ -0.5
SSL2YIL143C TY3B-GQ99315 1547 aa11.93□□□□□ -0.5
SSL2YIL143C BFR2Q06631 534 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C TY1B-HO13535 1793 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-DR5P0C2I2 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-DR6P0C2I3 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-LR2P0C2I5 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-LR3P0C2I6 1755 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C TY1B-PR1P0C2I9 1755 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C TY1B-PR2P0C2J0 1756 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-PR3P0C2J1 1755 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C TY1B-JR1P47098 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-ML2Q03434 1755 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C TY1B-ER1Q03612 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-ML1Q04711 1755 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C TY1B-GR2Q12269 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-OLQ12273 1755 aa11.93□□□□□ -0.5
SSL2YIL143C TY1B-PLQ12414 1755 aaKnown RBP11.93□□□□□ -0.5
SSL2YIL143C ENP1P38333 483 aaKnown RBP11.89□□□□□ -0.51
SSL2YIL143C TY1B-BRQ12193 1756 aa11.88□□□□□ -0.51
SSL2YIL143C TY1B-GR3Q12316 1755 aa11.88□□□□□ -0.51
SSL2YIL143C TY1B-ORQ92393 1755 aa11.88□□□□□ -0.51
Retrieved 100 of 5,963 RNA–protein pairs in 56.4 ms