Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MIR639-201ENST00000384974 98 ntBASIC23.25■■□□□ 1.31
ABCA4P78363 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC23.25■■□□□ 1.31
ABCA4P78363 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
ABCA4P78363 AC021231.2-201ENST00000594613 730 ntBASIC23.24■■□□□ 1.31
ABCA4P78363 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
ABCA4P78363 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.24■■□□□ 1.31
ABCA4P78363 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
ABCA4P78363 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC23.23■■□□□ 1.31
ABCA4P78363 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
ABCA4P78363 HSD17B1P1-201ENST00000590052 955 ntBASIC23.22■■□□□ 1.31
ABCA4P78363 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
ABCA4P78363 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
ABCA4P78363 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
ABCA4P78363 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
ABCA4P78363 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ABCA4P78363 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.21■■□□□ 1.31
ABCA4P78363 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.21■■□□□ 1.31
ABCA4P78363 MIR3648-2-201ENST00000581792 180 ntBASIC23.21■■□□□ 1.31
ABCA4P78363 MIR3648-1-201ENST00000615959 180 ntBASIC23.21■■□□□ 1.31
ABCA4P78363 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.2■■□□□ 1.3
ABCA4P78363 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
ABCA4P78363 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.2■■□□□ 1.3
ABCA4P78363 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ABCA4P78363 AC108673.1-201ENST00000510422 1159 ntBASIC23.19■■□□□ 1.3
ABCA4P78363 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ABCA4P78363 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC23.17■■□□□ 1.3
ABCA4P78363 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ABCA4P78363 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ABCA4P78363 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
ABCA4P78363 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.14■■□□□ 1.29
ABCA4P78363 MIR6090-201ENST00000622481 60 ntBASIC23.14■■□□□ 1.29
ABCA4P78363 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
ABCA4P78363 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.13■■□□□ 1.29
ABCA4P78363 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
ABCA4P78363 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
ABCA4P78363 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
ABCA4P78363 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
ABCA4P78363 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.12■■□□□ 1.29
ABCA4P78363 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.12■■□□□ 1.29
ABCA4P78363 CR559946.2-201ENST00000623684 991 ntBASIC23.12■■□□□ 1.29
ABCA4P78363 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
ABCA4P78363 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
ABCA4P78363 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
ABCA4P78363 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
ABCA4P78363 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
ABCA4P78363 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
ABCA4P78363 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
ABCA4P78363 AC016575.1-201ENST00000607026 382 ntBASIC23.08■■□□□ 1.29
ABCA4P78363 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
ABCA4P78363 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.07■■□□□ 1.28
ABCA4P78363 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.07■■□□□ 1.28
ABCA4P78363 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.07■■□□□ 1.28
ABCA4P78363 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.07■■□□□ 1.28
ABCA4P78363 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.05■■□□□ 1.28
ABCA4P78363 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
ABCA4P78363 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
ABCA4P78363 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ABCA4P78363 LINC01971-201ENST00000617888 1048 ntBASIC23.04■■□□□ 1.28
ABCA4P78363 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ABCA4P78363 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.03■■□□□ 1.28
ABCA4P78363 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ABCA4P78363 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
ABCA4P78363 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
ABCA4P78363 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
ABCA4P78363 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
ABCA4P78363 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
ABCA4P78363 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
ABCA4P78363 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC23.01■■□□□ 1.27
ABCA4P78363 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ABCA4P78363 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
ABCA4P78363 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC23■■□□□ 1.27
ABCA4P78363 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
ABCA4P78363 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.99■■□□□ 1.27
ABCA4P78363 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.99■■□□□ 1.27
ABCA4P78363 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
ABCA4P78363 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.99■■□□□ 1.27
ABCA4P78363 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
ABCA4P78363 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
ABCA4P78363 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
ABCA4P78363 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
ABCA4P78363 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
ABCA4P78363 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.98■■□□□ 1.27
ABCA4P78363 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.98■■□□□ 1.27
ABCA4P78363 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
ABCA4P78363 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
ABCA4P78363 DUX4L11-201ENST00000611504 1267 ntBASIC22.96■■□□□ 1.27
ABCA4P78363 DUX4L12-201ENST00000614593 1267 ntBASIC22.96■■□□□ 1.27
ABCA4P78363 DUX4L14-201ENST00000621227 1267 ntBASIC22.96■■□□□ 1.27
ABCA4P78363 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
ABCA4P78363 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.96■■□□□ 1.27
ABCA4P78363 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
ABCA4P78363 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
ABCA4P78363 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
ABCA4P78363 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
ABCA4P78363 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC22.94■■□□□ 1.26
ABCA4P78363 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
ABCA4P78363 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
ABCA4P78363 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
ABCA4P78363 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
ABCA4P78363 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.93■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms