Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
APOBP04114 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC17.23■□□□□ 0.35
APOBP04114 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOBP04114 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOBP04114 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
APOBP04114 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOBP04114 RARRES2P2-201ENST00000394842 485 ntBASIC17.21■□□□□ 0.35
APOBP04114 DUX4L13-201ENST00000554103 1267 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L15-201ENST00000611059 1267 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L23-201ENST00000615195 1269 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L24-201ENST00000617576 1269 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L22-201ENST00000618238 1269 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L20-201ENST00000619712 1269 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L21-201ENST00000622058 1269 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L10-201ENST00000622460 1267 ntBASIC17.21■□□□□ 0.34
APOBP04114 DUX4L25-201ENST00000624915 1269 ntBASIC17.21■□□□□ 0.34
APOBP04114 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
APOBP04114 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOBP04114 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
APOBP04114 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
APOBP04114 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC17.18■□□□□ 0.34
APOBP04114 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOBP04114 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOBP04114 DUX4L11-201ENST00000611504 1267 ntBASIC17.18■□□□□ 0.34
APOBP04114 DUX4L12-201ENST00000614593 1267 ntBASIC17.18■□□□□ 0.34
APOBP04114 DUX4L14-201ENST00000621227 1267 ntBASIC17.18■□□□□ 0.34
APOBP04114 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
APOBP04114 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOBP04114 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOBP04114 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC17.17■□□□□ 0.34
APOBP04114 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOBP04114 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOBP04114 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
APOBP04114 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOBP04114 CIB2-204ENST00000557846 934 ntTSL 3 BASIC17.15■□□□□ 0.34
APOBP04114 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
APOBP04114 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOBP04114 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC17.14■□□□□ 0.34
APOBP04114 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOBP04114 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
APOBP04114 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOBP04114 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC17.13■□□□□ 0.33
APOBP04114 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOBP04114 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOBP04114 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOBP04114 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOBP04114 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
APOBP04114 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC17.12■□□□□ 0.33
APOBP04114 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
APOBP04114 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.12■□□□□ 0.33
APOBP04114 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOBP04114 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOBP04114 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOBP04114 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC17.1■□□□□ 0.33
APOBP04114 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
APOBP04114 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOBP04114 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOBP04114 METRNL-202ENST00000570778 967 ntTSL 5 BASIC17.09■□□□□ 0.33
APOBP04114 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.09■□□□□ 0.33
APOBP04114 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
APOBP04114 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC17.09■□□□□ 0.33
APOBP04114 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC17.08■□□□□ 0.33
APOBP04114 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
APOBP04114 ABHD17AP5-201ENST00000580133 923 ntBASIC17.08■□□□□ 0.32
APOBP04114 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.08■□□□□ 0.32
APOBP04114 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
APOBP04114 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC17.07■□□□□ 0.32
APOBP04114 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOBP04114 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
APOBP04114 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.07■□□□□ 0.32
APOBP04114 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC17.06■□□□□ 0.32
APOBP04114 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC17.06■□□□□ 0.32
APOBP04114 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOBP04114 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOBP04114 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOBP04114 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
APOBP04114 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
APOBP04114 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
APOBP04114 HES6-205ENST00000409356 528 ntTSL 2 BASIC17.03■□□□□ 0.32
APOBP04114 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
APOBP04114 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
APOBP04114 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.03■□□□□ 0.32
APOBP04114 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.02■□□□□ 0.32
APOBP04114 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
APOBP04114 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
APOBP04114 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
APOBP04114 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
APOBP04114 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC17.01■□□□□ 0.31
APOBP04114 AC108673.1-201ENST00000510422 1159 ntBASIC17.01■□□□□ 0.31
APOBP04114 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
APOBP04114 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOBP04114 RNF126P1-201ENST00000567452 1320 ntBASIC16.98■□□□□ 0.31
APOBP04114 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOBP04114 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOBP04114 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC16.98■□□□□ 0.31
APOBP04114 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOBP04114 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.98■□□□□ 0.31
APOBP04114 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16.98■□□□□ 0.31
APOBP04114 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
APOBP04114 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms