Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.31■□□□□ 0.84
LSM1O15116 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.31■□□□□ 0.84
LSM1O15116 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LSM1O15116 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LSM1O15116 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM1O15116 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LSM1O15116 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.3■□□□□ 0.84
LSM1O15116 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 AC024257.2-201ENST00000549699 147 ntBASIC20.3■□□□□ 0.84
LSM1O15116 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM1O15116 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 AL157384.1-201ENST00000445995 2473 ntBASIC20.3■□□□□ 0.84
LSM1O15116 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM1O15116 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LSM1O15116 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LSM1O15116 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LSM1O15116 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LSM1O15116 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.29■□□□□ 0.84
LSM1O15116 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LSM1O15116 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LSM1O15116 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM1O15116 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
LSM1O15116 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.28■□□□□ 0.84
LSM1O15116 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.28■□□□□ 0.84
LSM1O15116 IGHV3-19-201ENST00000521488 291 ntBASIC20.28■□□□□ 0.84
LSM1O15116 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.28■□□□□ 0.84
LSM1O15116 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.28■□□□□ 0.84
LSM1O15116 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.28■□□□□ 0.84
LSM1O15116 AL136162.1-201ENST00000607711 1078 ntBASIC20.28■□□□□ 0.84
LSM1O15116 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
LSM1O15116 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.28■□□□□ 0.84
LSM1O15116 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM1O15116 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
LSM1O15116 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LSM1O15116 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
LSM1O15116 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.27■□□□□ 0.84
LSM1O15116 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
LSM1O15116 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.27■□□□□ 0.84
LSM1O15116 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.27■□□□□ 0.84
LSM1O15116 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 AC126544.1-201ENST00000580842 1059 ntBASIC20.27■□□□□ 0.84
LSM1O15116 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.27■□□□□ 0.84
LSM1O15116 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM1O15116 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LSM1O15116 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
LSM1O15116 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LSM1O15116 AC135279.3-201ENST00000610945 1311 ntBASIC20.27■□□□□ 0.83
LSM1O15116 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.26■□□□□ 0.83
LSM1O15116 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
LSM1O15116 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.26■□□□□ 0.83
LSM1O15116 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LSM1O15116 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms