RNA–Protein interactions for RNA: ENST00000372064.8

VEGFA-204, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 2,909 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-204ENST00000372064 NISCHQ9Y2I1 1504 aa44.08■■■■■ 4.65
VEGFA-204ENST00000372064 CCDC180Q9P1Z9 1646 aa37.86■■■■□ 3.65
VEGFA-204ENST00000372064 ZCCHC6Q5VYS8 1495 aaKnown RBP37.25■■■■□ 3.55
VEGFA-204ENST00000372064 SHROOM4Q9ULL8 1493 aa37■■■■□ 3.51
VEGFA-204ENST00000372064 DCAF8L2P0C7V8 631 aa36.45■■■■□ 3.43
VEGFA-204ENST00000372064 DCAF1Q9Y4B6 1507 aa36.39■■■■□ 3.42
VEGFA-204ENST00000372064 SUPT5HO00267 1087 aaKnown RBP36.07■■■■□ 3.36
VEGFA-204ENST00000372064 MYO15BQ96JP2 1530 aa35.53■■■■□ 3.28
VEGFA-204ENST00000372064 ABCC9O60706 1549 aa35.19■■■■□ 3.22
VEGFA-204ENST00000372064 SCRIBQ14160 1630 aa35.12■■■■□ 3.21
VEGFA-204ENST00000372064 NACADO15069 1562 aa35.01■■■■□ 3.2
VEGFA-204ENST00000372064 CHIC1Q5VXU3 224 aa34.94■■■■□ 3.18
VEGFA-204ENST00000372064 RSF1Q96T23 1441 aaPredicted RBP34.64■■■■□ 3.14
VEGFA-204ENST00000372064 RB1CC1Q8TDY2 1594 aa34.46■■■■□ 3.11
VEGFA-204ENST00000372064 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
VEGFA-204ENST00000372064 MROH2BQ7Z745 1585 aa34.15■■■■□ 3.06
VEGFA-204ENST00000372064 WIZO95785 1651 aa33.94■■■■□ 3.02
VEGFA-204ENST00000372064 UNC13AQ9UPW8 1703 aa33.92■■■■□ 3.02
VEGFA-204ENST00000372064 BAZ1AQ9NRL2 1556 aaPredicted RBP33.91■■■■□ 3.02
VEGFA-204ENST00000372064 LOC105371045A0A1W2PR82 267 aa33.79■■■■□ 3
VEGFA-204ENST00000372064 TRIM41Q8WV44 630 aa33.68■■■□□ 2.98
VEGFA-204ENST00000372064 SMARCA4P51532 1647 aa33.66■■■□□ 2.98
VEGFA-204ENST00000372064 TOP2AP11388 1531 aaKnown RBP33.54■■■□□ 2.96
VEGFA-204ENST00000372064 PABPN1Q86U42 306 aaKnown RBP eCLIP33.52■■■□□ 2.967e-13■□□□□ 11.3
VEGFA-204ENST00000372064 BICRAQ9NZM4 1560 aa33.52■■■□□ 2.96
VEGFA-204ENST00000372064 EIF4G1Q04637 1599 aaKnown RBP33.5■■■□□ 2.95
VEGFA-204ENST00000372064 FAM9AQ8IZU1 332 aaPredicted RBP33.32■■■□□ 2.92
VEGFA-204ENST00000372064 SMARCA2P51531 1590 aa33.3■■■□□ 2.92
VEGFA-204ENST00000372064 PCGF6Q9BYE7 350 aa33.27■■■□□ 2.92
VEGFA-204ENST00000372064 CCDC88BA6NC98 1476 aa33.27■■■□□ 2.92
VEGFA-204ENST00000372064 PEG3Q9GZU2 1588 aa33.18■■■□□ 2.9
VEGFA-204ENST00000372064 HRCP23327 699 aa33.18■■■□□ 2.9
VEGFA-204ENST00000372064 EHMT2Q96KQ7 1210 aa32.98■■■□□ 2.87
VEGFA-204ENST00000372064 ABCC8Q09428 1581 aa32.96■■■□□ 2.87
VEGFA-204ENST00000372064 TRIM26Q12899 539 aaPredicted RBP32.94■■■□□ 2.86
VEGFA-204ENST00000372064 ATAD2BQ9ULI0 1458 aa32.85■■■□□ 2.85
VEGFA-204ENST00000372064 BAZ1BQ9UIG0 1483 aaKnown RBP32.72■■■□□ 2.83
VEGFA-204ENST00000372064 EEA1Q15075 1411 aa32.57■■■□□ 2.81
VEGFA-204ENST00000372064 SOGA1O94964 1423 aa32.57■■■□□ 2.8
VEGFA-204ENST00000372064 WRNQ14191 1432 aaPredicted RBP eCLIP32.54■■■□□ 2.81e-6■■■■□ 26.4
VEGFA-204ENST00000372064 RUSC2Q8N2Y8 1516 aa32.43■■■□□ 2.78
VEGFA-204ENST00000372064 SYNJ1O43426 1573 aa32.42■■■□□ 2.78
VEGFA-204ENST00000372064 HMGXB3Q12766 1538 aa32.38■■■□□ 2.77
VEGFA-204ENST00000372064 CSRNP3Q8WYN3 585 aa32.37■■■□□ 2.77
VEGFA-204ENST00000372064 NCAPD3P42695 1498 aa32.35■■■□□ 2.77
VEGFA-204ENST00000372064 TNIKQ9UKE5 1360 aa32.34■■■□□ 2.77
VEGFA-204ENST00000372064 PPARGC1BQ86YN6 1023 aaKnown RBP32.31■■■□□ 2.76
VEGFA-204ENST00000372064 CEP162Q5TB80 1403 aa32.28■■■□□ 2.76
VEGFA-204ENST00000372064 GOLGA3Q08378 1498 aa32.23■■■□□ 2.75
VEGFA-204ENST00000372064 TOP2BQ02880 1626 aa32.16■■■□□ 2.74
VEGFA-204ENST00000372064 KIF21BO75037 1637 aa32.15■■■□□ 2.74
VEGFA-204ENST00000372064 UBTFP17480 764 aaKnown RBP32.14■■■□□ 2.74
VEGFA-204ENST00000372064 ZEB1P37275 1124 aaPredicted RBP32.11■■■□□ 2.73
VEGFA-204ENST00000372064 CEP164Q9UPV0 1460 aa32.1■■■□□ 2.73
VEGFA-204ENST00000372064 BIVM-ERCC5R4GMW8 1640 aa32.1■■■□□ 2.73
VEGFA-204ENST00000372064 CFTRP13569 1480 aa31.95■■■□□ 2.71
VEGFA-204ENST00000372064 CUX1P39880 1505 aa31.85■■■□□ 2.69
VEGFA-204ENST00000372064 RAPGEF2Q9Y4G8 1499 aa31.83■■■□□ 2.69
VEGFA-204ENST00000372064 PRDM2Q13029 1718 aa31.82■■■□□ 2.68
VEGFA-204ENST00000372064 TTBK1Q5TCY1 1321 aaPredicted RBP31.81■■■□□ 2.68
VEGFA-204ENST00000372064 CLIP1P30622 1438 aa31.76■■■□□ 2.67
VEGFA-204ENST00000372064 ERICH3Q5RHP9 1530 aa31.72■■■□□ 2.67
VEGFA-204ENST00000372064 CC2D2AQ9P2K1 1620 aa31.71■■■□□ 2.67
VEGFA-204ENST00000372064 PRXQ9BXM0 1461 aa31.7■■■□□ 2.67
VEGFA-204ENST00000372064 CADPSQ9ULU8 1353 aa31.65■■■□□ 2.66
VEGFA-204ENST00000372064 VPS8Q8N3P4 1428 aa31.64■■■□□ 2.66
VEGFA-204ENST00000372064 KIF27Q86VH2 1401 aa31.59■■■□□ 2.65
VEGFA-204ENST00000372064 RANGAP1P46060 587 aaPredicted RBP31.55■■■□□ 2.64
VEGFA-204ENST00000372064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.55■■■□□ 2.64
VEGFA-204ENST00000372064 CCER1Q8TC90 406 aaPredicted RBP31.46■■■□□ 2.63
VEGFA-204ENST00000372064 ARAP1Q96P48 1450 aa31.36■■■□□ 2.61
VEGFA-204ENST00000372064 CUX2O14529 1486 aa31.35■■■□□ 2.61
VEGFA-204ENST00000372064 FGD5Q6ZNL6 1462 aa31.33■■■□□ 2.61
VEGFA-204ENST00000372064 APLP2Q06481 763 aa31.32■■■□□ 2.6
VEGFA-204ENST00000372064 FANCD2Q9BXW9 1451 aa31.32■■■□□ 2.6
VEGFA-204ENST00000372064 IGF1RP08069 1367 aa31.26■■■□□ 2.6
VEGFA-204ENST00000372064 NESP48681 1621 aa31.22■■■□□ 2.59
VEGFA-204ENST00000372064 DNMBPQ6XZF7 1577 aa31.17■■■□□ 2.58
VEGFA-204ENST00000372064 ARHGAP35Q9NRY4 1499 aa31.15■■■□□ 2.58
VEGFA-204ENST00000372064 CARMIL1Q5VZK9 1371 aa31.12■■■□□ 2.57
VEGFA-204ENST00000372064 HNRNPUL2Q1KMD3 747 aaKnown RBP31.11■■■□□ 2.57
VEGFA-204ENST00000372064 TOPBP1Q92547 1522 aa31.08■■■□□ 2.57
VEGFA-204ENST00000372064 RAD54L2Q9Y4B4 1467 aa31.05■■■□□ 2.56
VEGFA-204ENST00000372064 LAMC3Q9Y6N6 1575 aa31.05■■■□□ 2.56
VEGFA-204ENST00000372064 ABCA10Q8WWZ4 1543 aa31.04■■■□□ 2.56
VEGFA-204ENST00000372064 POLA1P09884 1462 aaPredicted RBP31.03■■■□□ 2.56
VEGFA-204ENST00000372064 KANK4Q5T7N3 995 aaPredicted RBP31.01■■■□□ 2.55
VEGFA-204ENST00000372064 DNAJC5BQ9UF47 199 aa31■■■□□ 2.55
VEGFA-204ENST00000372064 URB2Q14146 1524 aaKnown RBP30.9■■■□□ 2.54
VEGFA-204ENST00000372064 RRBP1Q9P2E9 1410 aaKnown RBP30.89■■■□□ 2.54
VEGFA-204ENST00000372064 MAP3K1Q13233 1512 aa30.87■■■□□ 2.53
VEGFA-204ENST00000372064 WDR97A6NE52 1622 aa30.86■■■□□ 2.53
VEGFA-204ENST00000372064 CUL7Q14999 1698 aa30.86■■■□□ 2.53
VEGFA-204ENST00000372064 PDS5BQ9NTI5 1447 aa30.82■■■□□ 2.52
VEGFA-204ENST00000372064 TIAM1Q13009 1591 aa30.79■■■□□ 2.52
VEGFA-204ENST00000372064 FHAD1B1AJZ9 1412 aa30.72■■■□□ 2.51
VEGFA-204ENST00000372064 ABCA5Q8WWZ7 1642 aa30.72■■■□□ 2.51
VEGFA-204ENST00000372064 CTTNBP2Q8WZ74 1663 aa30.7■■■□□ 2.51
VEGFA-204ENST00000372064 EFCAB5A4FU69 1503 aa30.7■■■□□ 2.51
VEGFA-204ENST00000372064 P3H3Q8IVL6 736 aa30.7■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms