RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 NISCHQ9Y2I1 1504 aa48.49■■■■■ 5.35
TPM1-208ENST00000404484 CCDC180Q9P1Z9 1646 aa42.98■■■■■ 4.47
TPM1-208ENST00000404484 ABCC9O60706 1549 aa42.27■■■■■ 4.36
TPM1-208ENST00000404484 DCAF8L2P0C7V8 631 aa40.69■■■■■ 4.1
TPM1-208ENST00000404484 RB1CC1Q8TDY2 1594 aa40.55■■■■■ 4.08
TPM1-208ENST00000404484 NACADO15069 1562 aa40.51■■■■■ 4.07
TPM1-208ENST00000404484 ZCCHC6Q5VYS8 1495 aaKnown RBP40.35■■■■■ 4.05
TPM1-208ENST00000404484 MYO15BQ96JP2 1530 aa40.24■■■■■ 4.03
TPM1-208ENST00000404484 DCAF1Q9Y4B6 1507 aa40.06■■■■■ 4
TPM1-208ENST00000404484 UNC13AQ9UPW8 1703 aa39.6■■■■□ 3.93
TPM1-208ENST00000404484 PABPN1Q86U42 306 aaKnown RBP eCLIP39.6■■■■□ 3.931e-13■■■□□ 18.2
TPM1-208ENST00000404484 BICRAQ9NZM4 1560 aa39.38■■■■□ 3.89
TPM1-208ENST00000404484 SCRIBQ14160 1630 aa39.32■■■■□ 3.88
TPM1-208ENST00000404484 DNAJC5BQ9UF47 199 aa38.98■■■■□ 3.83
TPM1-208ENST00000404484 SHROOM4Q9ULL8 1493 aa38.86■■■■□ 3.81
TPM1-208ENST00000404484 EIF4G1Q04637 1599 aaKnown RBP38.32■■■■□ 3.73
TPM1-208ENST00000404484 CC2D2AQ9P2K1 1620 aa38.19■■■■□ 3.7
TPM1-208ENST00000404484 CECR2Q9BXF3 1484 aa37.98■■■■□ 3.67
TPM1-208ENST00000404484 SMARCA4P51532 1647 aa37.58■■■■□ 3.61
TPM1-208ENST00000404484 BAZ1AQ9NRL2 1556 aaPredicted RBP37.54■■■■□ 3.6
TPM1-208ENST00000404484 ATAD2BQ9ULI0 1458 aa37.46■■■■□ 3.59
TPM1-208ENST00000404484 NCAPD3P42695 1498 aa37.44■■■■□ 3.58
TPM1-208ENST00000404484 MROH2BQ7Z745 1585 aa37.39■■■■□ 3.58
TPM1-208ENST00000404484 SMARCA2P51531 1590 aa37.34■■■■□ 3.57
TPM1-208ENST00000404484 SUPT5HO00267 1087 aaKnown RBP37.23■■■■□ 3.55
TPM1-208ENST00000404484 PEG3Q9GZU2 1588 aa37.21■■■■□ 3.55
TPM1-208ENST00000404484 HMGXB3Q12766 1538 aa37.17■■■■□ 3.54
TPM1-208ENST00000404484 BAZ1BQ9UIG0 1483 aaKnown RBP37.12■■■■□ 3.53
TPM1-208ENST00000404484 RSF1Q96T23 1441 aaPredicted RBP37.01■■■■□ 3.52
TPM1-208ENST00000404484 WIZO95785 1651 aa36.96■■■■□ 3.51
TPM1-208ENST00000404484 NESP48681 1621 aa36.59■■■■□ 3.45
TPM1-208ENST00000404484 TOP2AP11388 1531 aaKnown RBP36.52■■■■□ 3.44
TPM1-208ENST00000404484 ERCC6Q03468 1493 aa36.4■■■■□ 3.42
TPM1-208ENST00000404484 LAMC3Q9Y6N6 1575 aa36.38■■■■□ 3.41
TPM1-208ENST00000404484 CADPSQ9ULU8 1353 aa36.38■■■■□ 3.41
TPM1-208ENST00000404484 PDS5BQ9NTI5 1447 aa36.21■■■■□ 3.39
TPM1-208ENST00000404484 CCDC88BA6NC98 1476 aa36.18■■■■□ 3.38
TPM1-208ENST00000404484 CFTRP13569 1480 aa36.12■■■■□ 3.37
TPM1-208ENST00000404484 KIF21AQ7Z4S6 1674 aa36.04■■■■□ 3.36
TPM1-208ENST00000404484 CUX2O14529 1486 aa36■■■■□ 3.35
TPM1-208ENST00000404484 FANCD2Q9BXW9 1451 aa35.93■■■■□ 3.34
TPM1-208ENST00000404484 THOC2Q8NI27 1593 aaKnown RBP35.93■■■■□ 3.34
TPM1-208ENST00000404484 CEP164Q9UPV0 1460 aa35.85■■■■□ 3.33
TPM1-208ENST00000404484 MRC2Q9UBG0 1479 aa35.81■■■■□ 3.32
TPM1-208ENST00000404484 PRDM2Q13029 1718 aa35.67■■■■□ 3.3
TPM1-208ENST00000404484 WDR62O43379 1518 aa35.67■■■■□ 3.3
TPM1-208ENST00000404484 CHIC1Q5VXU3 224 aa35.59■■■■□ 3.29
TPM1-208ENST00000404484 URB2Q14146 1524 aaKnown RBP35.57■■■■□ 3.29
TPM1-208ENST00000404484 TOPBP1Q92547 1522 aa35.34■■■■□ 3.25
TPM1-208ENST00000404484 ABCC8Q09428 1581 aa35.3■■■■□ 3.24
TPM1-208ENST00000404484 DNMBPQ6XZF7 1577 aa35.24■■■■□ 3.23
TPM1-208ENST00000404484 TRIM41Q8WV44 630 aa35.11■■■■□ 3.21
TPM1-208ENST00000404484 IFT140Q96RY7 1462 aa35.11■■■■□ 3.21
TPM1-208ENST00000404484 DNAJC5Q9H3Z4 198 aa35.08■■■■□ 3.21
TPM1-208ENST00000404484 CUX1P39880 1505 aa35.07■■■■□ 3.2
TPM1-208ENST00000404484 POLA1P09884 1462 aaPredicted RBP35.04■■■■□ 3.2
TPM1-208ENST00000404484 ZNF608Q9ULD9 1512 aaPredicted RBP35.01■■■■□ 3.2
TPM1-208ENST00000404484 FGD5Q6ZNL6 1462 aa34.95■■■■□ 3.18
TPM1-208ENST00000404484 SOGA1O94964 1423 aa34.94■■■■□ 3.18
TPM1-208ENST00000404484 RAD54L2Q9Y4B4 1467 aa34.94■■■■□ 3.18
TPM1-208ENST00000404484 TARBP1Q13395 1621 aaKnown RBP34.92■■■■□ 3.18
TPM1-208ENST00000404484 WRNQ14191 1432 aaPredicted RBP eCLIP34.88■■■■□ 3.17
TPM1-208ENST00000404484 AQRO60306 1485 aaKnown RBP eCLIP34.84■■■■□ 3.171e-12■■■■□ 23
TPM1-208ENST00000404484 TDRD9Q8NDG6 1382 aaKnown RBP34.79■■■■□ 3.16
TPM1-208ENST00000404484 EIF4G3O43432 1585 aaKnown RBP34.77■■■■□ 3.16
TPM1-208ENST00000404484 SYNJ1O43426 1573 aa34.72■■■■□ 3.15
TPM1-208ENST00000404484 TOP2BQ02880 1626 aa34.71■■■■□ 3.15
TPM1-208ENST00000404484 BIVM-ERCC5R4GMW8 1640 aa34.67■■■■□ 3.14
TPM1-208ENST00000404484 OSCARQ8IYS5 282 aa34.63■■■■□ 3.13
TPM1-208ENST00000404484 ABCA10Q8WWZ4 1543 aa34.6■■■■□ 3.13
TPM1-208ENST00000404484 WDR97A6NE52 1622 aa34.56■■■■□ 3.12
TPM1-208ENST00000404484 GAPVD1Q14C86 1478 aa34.5■■■■□ 3.11
TPM1-208ENST00000404484 GRIN2BQ13224 1484 aa34.48■■■■□ 3.11
TPM1-208ENST00000404484 FBLN2P98095 1184 aa34.47■■■■□ 3.11
TPM1-208ENST00000404484 SNAPC4Q5SXM2 1469 aa34.44■■■■□ 3.1
TPM1-208ENST00000404484 ABCA5Q8WWZ7 1642 aa34.41■■■■□ 3.1
TPM1-208ENST00000404484 EEA1Q15075 1411 aa34.4■■■■□ 3.1
TPM1-208ENST00000404484 MAGI1Q96QZ7 1491 aaPredicted RBP34.37■■■■□ 3.09
TPM1-208ENST00000404484 CHMP7Q8WUX9 453 aaPredicted RBP34.34■■■■□ 3.09
TPM1-208ENST00000404484 FAM9AQ8IZU1 332 aaPredicted RBP34.33■■■■□ 3.09
TPM1-208ENST00000404484 CHD1O14646 1710 aa34.32■■■■□ 3.08
TPM1-208ENST00000404484 PBRM1Q86U86 1689 aa34.32■■■■□ 3.08
TPM1-208ENST00000404484 SYNJ2O15056 1496 aa34.26■■■■□ 3.08
TPM1-208ENST00000404484 ERICH3Q5RHP9 1530 aa34.15■■■■□ 3.06
TPM1-208ENST00000404484 RUSC2Q8N2Y8 1516 aa34.13■■■■□ 3.05
TPM1-208ENST00000404484 LOC105371045A0A1W2PR82 267 aa34.12■■■■□ 3.05
TPM1-208ENST00000404484 KIF27Q86VH2 1401 aa34.11■■■■□ 3.05
TPM1-208ENST00000404484 CSRNP3Q8WYN3 585 aa34.11■■■■□ 3.05
TPM1-208ENST00000404484 FHAD1B1AJZ9 1412 aa34.09■■■■□ 3.05
TPM1-208ENST00000404484 ADAMTS12P58397 1594 aa34.08■■■■□ 3.05
TPM1-208ENST00000404484 IGF1RP08069 1367 aa34.06■■■■□ 3.04
TPM1-208ENST00000404484 GRIN2AQ12879 1464 aa34.04■■■■□ 3.04
TPM1-208ENST00000404484 CLASP1Q7Z460 1538 aa33.99■■■■□ 3.03
TPM1-208ENST00000404484 ARHGEF11O15085 1522 aa33.97■■■■□ 3.03
TPM1-208ENST00000404484 RIMBP3CA6NJZ7 1639 aa33.96■■■■□ 3.03
TPM1-208ENST00000404484 RIMBP3BA6NNM3 1639 aa33.96■■■■□ 3.03
TPM1-208ENST00000404484 RIMBP3Q9UFD9 1639 aa33.96■■■■□ 3.03
TPM1-208ENST00000404484 KIF21BO75037 1637 aa33.91■■■■□ 3.02
TPM1-208ENST00000404484 NUP160Q12769 1436 aa33.9■■■■□ 3.02
TPM1-208ENST00000404484 CEP170Q5SW79 1584 aa33.86■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms