RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 NISCHQ9Y2I1 1504 aa42.28■■■■■ 4.36
CLK3-202ENST00000395066 SHROOM4Q9ULL8 1493 aa36.56■■■■□ 3.44
CLK3-202ENST00000395066 SUPT5HO00267 1087 aaKnown RBP35.87■■■■□ 3.33
CLK3-202ENST00000395066 ZCCHC6Q5VYS8 1495 aaKnown RBP35.78■■■■□ 3.32
CLK3-202ENST00000395066 CCDC180Q9P1Z9 1646 aa35.71■■■■□ 3.31
CLK3-202ENST00000395066 DCAF8L2P0C7V8 631 aa35.4■■■■□ 3.26
CLK3-202ENST00000395066 MYO15BQ96JP2 1530 aa34.81■■■■□ 3.16
CLK3-202ENST00000395066 CHIC1Q5VXU3 224 aa34.8■■■■□ 3.16
CLK3-202ENST00000395066 DCAF1Q9Y4B6 1507 aa34.48■■■■□ 3.11
CLK3-202ENST00000395066 HRCP23327 699 aa34.01■■■■□ 3.03
CLK3-202ENST00000395066 PCGF6Q9BYE7 350 aa34.01■■■■□ 3.03
CLK3-202ENST00000395066 LOC105371045A0A1W2PR82 267 aa33.95■■■■□ 3.03
CLK3-202ENST00000395066 SCRIBQ14160 1630 aa33.82■■■■□ 3
CLK3-202ENST00000395066 ABCC9O60706 1549 aa33.8■■■■□ 3
CLK3-202ENST00000395066 RSF1Q96T23 1441 aaPredicted RBP33.59■■■□□ 2.97
CLK3-202ENST00000395066 PPARGC1BQ86YN6 1023 aaKnown RBP33.5■■■□□ 2.95
CLK3-202ENST00000395066 RB1CC1Q8TDY2 1594 aa33.35■■■□□ 2.93
CLK3-202ENST00000395066 TRIM41Q8WV44 630 aa33.26■■■□□ 2.92
CLK3-202ENST00000395066 FAM9AQ8IZU1 332 aaPredicted RBP33.21■■■□□ 2.91
CLK3-202ENST00000395066 CECR2Q9BXF3 1484 aa33.15■■■□□ 2.9
CLK3-202ENST00000395066 TRIM26Q12899 539 aaPredicted RBP33.13■■■□□ 2.89
CLK3-202ENST00000395066 EHMT2Q96KQ7 1210 aa33.1■■■□□ 2.89
CLK3-202ENST00000395066 NACADO15069 1562 aa33.02■■■□□ 2.88
CLK3-202ENST00000395066 MROH2BQ7Z745 1585 aa32.99■■■□□ 2.87
CLK3-202ENST00000395066 WIZO95785 1651 aa32.85■■■□□ 2.85
CLK3-202ENST00000395066 BAZ1AQ9NRL2 1556 aaPredicted RBP32.5■■■□□ 2.79
CLK3-202ENST00000395066 ZEB1P37275 1124 aaPredicted RBP32.37■■■□□ 2.77
CLK3-202ENST00000395066 EIF4G1Q04637 1599 aaKnown RBP32.34■■■□□ 2.77
CLK3-202ENST00000395066 ABCC8Q09428 1581 aa32.25■■■□□ 2.75
CLK3-202ENST00000395066 SMARCA4P51532 1647 aa32.18■■■□□ 2.74
CLK3-202ENST00000395066 TOP2AP11388 1531 aaKnown RBP32.18■■■□□ 2.74
CLK3-202ENST00000395066 CCDC88BA6NC98 1476 aa32.17■■■□□ 2.74
CLK3-202ENST00000395066 UNC13AQ9UPW8 1703 aa32.15■■■□□ 2.74
CLK3-202ENST00000395066 SMARCA2P51531 1590 aa32.08■■■□□ 2.73
CLK3-202ENST00000395066 TTBK1Q5TCY1 1321 aaPredicted RBP32.04■■■□□ 2.72
CLK3-202ENST00000395066 PABPN1Q86U42 306 aaKnown RBP eCLIP32.01■■■□□ 2.713e-7■□□□□ 9.5
CLK3-202ENST00000395066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32■■■□□ 2.71
CLK3-202ENST00000395066 SOGA1O94964 1423 aa31.96■■■□□ 2.71
CLK3-202ENST00000395066 RUSC2Q8N2Y8 1516 aa31.84■■■□□ 2.69
CLK3-202ENST00000395066 CCER1Q8TC90 406 aaPredicted RBP31.82■■■□□ 2.68
CLK3-202ENST00000395066 CEP162Q5TB80 1403 aa31.81■■■□□ 2.68
CLK3-202ENST00000395066 PELP1Q8IZL8 1130 aaKnown RBP31.74■■■□□ 2.67
CLK3-202ENST00000395066 BICRAQ9NZM4 1560 aa31.72■■■□□ 2.67
CLK3-202ENST00000395066 UBTFP17480 764 aaKnown RBP31.71■■■□□ 2.67
CLK3-202ENST00000395066 CSRNP3Q8WYN3 585 aa31.7■■■□□ 2.66
CLK3-202ENST00000395066 SCAF1Q9H7N4 1312 aaKnown RBP31.69■■■□□ 2.66
CLK3-202ENST00000395066 WRNQ14191 1432 aaPredicted RBP eCLIP31.66■■■□□ 2.66
CLK3-202ENST00000395066 TNIKQ9UKE5 1360 aa31.64■■■□□ 2.66
CLK3-202ENST00000395066 EEA1Q15075 1411 aa31.51■■■□□ 2.64
CLK3-202ENST00000395066 GOLGA3Q08378 1498 aa31.45■■■□□ 2.63
CLK3-202ENST00000395066 SYNJ1O43426 1573 aa31.44■■■□□ 2.62
CLK3-202ENST00000395066 PEG3Q9GZU2 1588 aa31.42■■■□□ 2.62
CLK3-202ENST00000395066 ATAD2BQ9ULI0 1458 aa31.34■■■□□ 2.61
CLK3-202ENST00000395066 RANGAP1P46060 587 aaPredicted RBP31.28■■■□□ 2.6
CLK3-202ENST00000395066 BAZ1BQ9UIG0 1483 aaKnown RBP31.28■■■□□ 2.6
CLK3-202ENST00000395066 DIEXFQ68CQ4 756 aaKnown RBP31.24■■■□□ 2.59
CLK3-202ENST00000395066 CEP164Q9UPV0 1460 aa31.23■■■□□ 2.59
CLK3-202ENST00000395066 ACIN1Q9UKV3 1341 aaKnown RBP31.21■■■□□ 2.59
CLK3-202ENST00000395066 HNRNPUL2Q1KMD3 747 aaKnown RBP31.18■■■□□ 2.58
CLK3-202ENST00000395066 CLIP1P30622 1438 aa31.17■■■□□ 2.58
CLK3-202ENST00000395066 KIF21BO75037 1637 aa31.15■■■□□ 2.58
CLK3-202ENST00000395066 RAPGEF2Q9Y4G8 1499 aa31.13■■■□□ 2.57
CLK3-202ENST00000395066 NEUROD1Q13562 356 aa31.11■■■□□ 2.57
CLK3-202ENST00000395066 VPS8Q8N3P4 1428 aa31■■■□□ 2.55
CLK3-202ENST00000395066 CENPBP07199 599 aaPredicted RBP30.95■■■□□ 2.55
CLK3-202ENST00000395066 APLP2Q06481 763 aa30.93■■■□□ 2.54
CLK3-202ENST00000395066 ZNF316A6NFI3 1004 aaPredicted RBP30.92■■■□□ 2.54
CLK3-202ENST00000395066 TOP2BQ02880 1626 aa30.91■■■□□ 2.54
CLK3-202ENST00000395066 GTF3C3Q9Y5Q9 886 aa30.86■■■□□ 2.53
CLK3-202ENST00000395066 BIVM-ERCC5R4GMW8 1640 aa30.77■■■□□ 2.52
CLK3-202ENST00000395066 YTHDC1Q96MU7 727 aaKnown RBP30.71■■■□□ 2.51
CLK3-202ENST00000395066 CUX1P39880 1505 aa30.68■■■□□ 2.5
CLK3-202ENST00000395066 PRXQ9BXM0 1461 aa30.68■■■□□ 2.5
CLK3-202ENST00000395066 ARAP1Q96P48 1450 aa30.65■■■□□ 2.5
CLK3-202ENST00000395066 KANK4Q5T7N3 995 aaPredicted RBP30.64■■■□□ 2.5
CLK3-202ENST00000395066 MIER1Q8N108 512 aa30.62■■■□□ 2.49
CLK3-202ENST00000395066 NCAPD3P42695 1498 aa30.61■■■□□ 2.49
CLK3-202ENST00000395066 ERICH3Q5RHP9 1530 aa30.6■■■□□ 2.49
CLK3-202ENST00000395066 HMGXB3Q12766 1538 aa30.57■■■□□ 2.49
CLK3-202ENST00000395066 KIF27Q86VH2 1401 aa30.51■■■□□ 2.47
CLK3-202ENST00000395066 CFTRP13569 1480 aa30.46■■■□□ 2.47
CLK3-202ENST00000395066 DHX57Q6P158 1386 aaKnown RBP30.42■■■□□ 2.46
CLK3-202ENST00000395066 ARHGAP35Q9NRY4 1499 aa30.36■■■□□ 2.45
CLK3-202ENST00000395066 ITGAEP38570 1179 aa30.36■■■□□ 2.45
CLK3-202ENST00000395066 MYT1Q01538 1121 aa30.29■■■□□ 2.44
CLK3-202ENST00000395066 CUX2O14529 1486 aa30.28■■■□□ 2.44
CLK3-202ENST00000395066 RRBP1Q9P2E9 1410 aaKnown RBP30.27■■■□□ 2.44
CLK3-202ENST00000395066 IGF1RP08069 1367 aa30.22■■■□□ 2.43
CLK3-202ENST00000395066 CCNB3Q8WWL7 1395 aa30.21■■■□□ 2.43
CLK3-202ENST00000395066 CLSPNQ9HAW4 1339 aa30.19■■■□□ 2.42
CLK3-202ENST00000395066 FGD5Q6ZNL6 1462 aa30.12■■■□□ 2.41
CLK3-202ENST00000395066 CADPSQ9ULU8 1353 aa30.12■■■□□ 2.41
CLK3-202ENST00000395066 PRDM2Q13029 1718 aa30.12■■■□□ 2.41
CLK3-202ENST00000395066 CARMIL1Q5VZK9 1371 aa30.1■■■□□ 2.41
CLK3-202ENST00000395066 P3H3Q8IVL6 736 aa30.09■■■□□ 2.41
CLK3-202ENST00000395066 RAB3GAP2Q9H2M9 1393 aa30.01■■■□□ 2.39
CLK3-202ENST00000395066 TIAM1Q13009 1591 aa30■■■□□ 2.39
CLK3-202ENST00000395066 ATP1B4Q9UN42 357 aaPredicted RBP30■■■□□ 2.39
CLK3-202ENST00000395066 PHLDB1Q86UU1 1377 aa29.94■■■□□ 2.38
CLK3-202ENST00000395066 FAM50AQ14320 339 aaKnown RBP29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms