RNA–Protein interactions for RNA: ENST00000377342.9

CBWD3-202, Transcript of COBW domain containing 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CBWD3, Length 1,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-202ENST00000377342 NISCHQ9Y2I1 1504 aa50.56■■■■■ 5.68
CBWD3-202ENST00000377342 CCDC180Q9P1Z9 1646 aa44.66■■■■■ 4.74
CBWD3-202ENST00000377342 ABCC9O60706 1549 aa42.82■■■■■ 4.45
CBWD3-202ENST00000377342 ZCCHC6Q5VYS8 1495 aaKnown RBP42.34■■■■■ 4.37
CBWD3-202ENST00000377342 DCAF1Q9Y4B6 1507 aa41.87■■■■■ 4.29
CBWD3-202ENST00000377342 MYO15BQ96JP2 1530 aa41.72■■■■■ 4.27
CBWD3-202ENST00000377342 NACADO15069 1562 aa41.7■■■■■ 4.27
CBWD3-202ENST00000377342 DCAF8L2P0C7V8 631 aa41.69■■■■■ 4.26
CBWD3-202ENST00000377342 RB1CC1Q8TDY2 1594 aa41.55■■■■■ 4.24
CBWD3-202ENST00000377342 UNC13AQ9UPW8 1703 aa40.81■■■■■ 4.12
CBWD3-202ENST00000377342 SCRIBQ14160 1630 aa40.81■■■■■ 4.12
CBWD3-202ENST00000377342 SHROOM4Q9ULL8 1493 aa40.4■■■■■ 4.06
CBWD3-202ENST00000377342 BICRAQ9NZM4 1560 aa40.37■■■■■ 4.05
CBWD3-202ENST00000377342 PABPN1Q86U42 306 aaKnown RBP eCLIP40.08■■■■■ 4.01
CBWD3-202ENST00000377342 CECR2Q9BXF3 1484 aa39.31■■■■□ 3.88
CBWD3-202ENST00000377342 EIF4G1Q04637 1599 aaKnown RBP39.19■■■■□ 3.86
CBWD3-202ENST00000377342 BAZ1AQ9NRL2 1556 aaPredicted RBP39.12■■■■□ 3.85
CBWD3-202ENST00000377342 SMARCA4P51532 1647 aa39.11■■■■□ 3.85
CBWD3-202ENST00000377342 MROH2BQ7Z745 1585 aa39.01■■■■□ 3.84
CBWD3-202ENST00000377342 CC2D2AQ9P2K1 1620 aa38.83■■■■□ 3.81
CBWD3-202ENST00000377342 RSF1Q96T23 1441 aaPredicted RBP38.81■■■■□ 3.8
CBWD3-202ENST00000377342 PEG3Q9GZU2 1588 aa38.71■■■■□ 3.79
CBWD3-202ENST00000377342 WIZO95785 1651 aa38.68■■■■□ 3.78
CBWD3-202ENST00000377342 ATAD2BQ9ULI0 1458 aa38.62■■■■□ 3.77
CBWD3-202ENST00000377342 SMARCA2P51531 1590 aa38.61■■■■□ 3.77
CBWD3-202ENST00000377342 DNAJC5BQ9UF47 199 aa38.53■■■■□ 3.76
CBWD3-202ENST00000377342 NCAPD3P42695 1498 aa38.44■■■■□ 3.74
CBWD3-202ENST00000377342 HMGXB3Q12766 1538 aa38.4■■■■□ 3.74
CBWD3-202ENST00000377342 BAZ1BQ9UIG0 1483 aaKnown RBP38.33■■■■□ 3.73
CBWD3-202ENST00000377342 SUPT5HO00267 1087 aaKnown RBP38.33■■■■□ 3.73
CBWD3-202ENST00000377342 TOP2AP11388 1531 aaKnown RBP38.27■■■■□ 3.72
CBWD3-202ENST00000377342 CCDC88BA6NC98 1476 aa37.77■■■■□ 3.64
CBWD3-202ENST00000377342 NESP48681 1621 aa37.35■■■■□ 3.57
CBWD3-202ENST00000377342 LAMC3Q9Y6N6 1575 aa37.34■■■■□ 3.57
CBWD3-202ENST00000377342 CFTRP13569 1480 aa37.34■■■■□ 3.57
CBWD3-202ENST00000377342 CADPSQ9ULU8 1353 aa37.33■■■■□ 3.57
CBWD3-202ENST00000377342 PRDM2Q13029 1718 aa37.28■■■■□ 3.56
CBWD3-202ENST00000377342 KIF21AQ7Z4S6 1674 aa37.01■■■■□ 3.51
CBWD3-202ENST00000377342 PDS5BQ9NTI5 1447 aa36.96■■■■□ 3.51
CBWD3-202ENST00000377342 FANCD2Q9BXW9 1451 aa36.96■■■■□ 3.51
CBWD3-202ENST00000377342 CEP164Q9UPV0 1460 aa36.83■■■■□ 3.49
CBWD3-202ENST00000377342 ERCC6Q03468 1493 aa36.78■■■■□ 3.48
CBWD3-202ENST00000377342 ABCC8Q09428 1581 aa36.72■■■■□ 3.47
CBWD3-202ENST00000377342 THOC2Q8NI27 1593 aaKnown RBP36.67■■■■□ 3.46
CBWD3-202ENST00000377342 MRC2Q9UBG0 1479 aa36.62■■■■□ 3.45
CBWD3-202ENST00000377342 URB2Q14146 1524 aaKnown RBP36.59■■■■□ 3.45
CBWD3-202ENST00000377342 CUX1P39880 1505 aa36.56■■■■□ 3.44
CBWD3-202ENST00000377342 WRNQ14191 1432 aaPredicted RBP eCLIP36.55■■■■□ 3.44
CBWD3-202ENST00000377342 SYNJ1O43426 1573 aa36.53■■■■□ 3.44
CBWD3-202ENST00000377342 DNMBPQ6XZF7 1577 aa36.53■■■■□ 3.44
CBWD3-202ENST00000377342 WDR62O43379 1518 aa36.52■■■■□ 3.44
CBWD3-202ENST00000377342 BIVM-ERCC5R4GMW8 1640 aa36.49■■■■□ 3.43
CBWD3-202ENST00000377342 TOPBP1Q92547 1522 aa36.49■■■■□ 3.43
CBWD3-202ENST00000377342 TOP2BQ02880 1626 aa36.46■■■■□ 3.43
CBWD3-202ENST00000377342 CHIC1Q5VXU3 224 aa36.29■■■■□ 3.4
CBWD3-202ENST00000377342 FGD5Q6ZNL6 1462 aa36.27■■■■□ 3.4
CBWD3-202ENST00000377342 POLA1P09884 1462 aaPredicted RBP36.24■■■■□ 3.39
CBWD3-202ENST00000377342 CUX2O14529 1486 aa36.16■■■■□ 3.38
CBWD3-202ENST00000377342 TRIM41Q8WV44 630 aa36.13■■■■□ 3.37
CBWD3-202ENST00000377342 TARBP1Q13395 1621 aaKnown RBP36.09■■■■□ 3.37
CBWD3-202ENST00000377342 WDR97A6NE52 1622 aa36.06■■■■□ 3.36
CBWD3-202ENST00000377342 RAD54L2Q9Y4B4 1467 aa36.06■■■■□ 3.36
CBWD3-202ENST00000377342 SOGA1O94964 1423 aa36.01■■■■□ 3.35
CBWD3-202ENST00000377342 IFT140Q96RY7 1462 aa36■■■■□ 3.35
CBWD3-202ENST00000377342 ABCA10Q8WWZ4 1543 aa35.94■■■■□ 3.34
CBWD3-202ENST00000377342 ZNF608Q9ULD9 1512 aaPredicted RBP35.84■■■■□ 3.33
CBWD3-202ENST00000377342 ABCA5Q8WWZ7 1642 aa35.82■■■■□ 3.32
CBWD3-202ENST00000377342 EIF4G3O43432 1585 aaKnown RBP35.8■■■■□ 3.32
CBWD3-202ENST00000377342 TDRD9Q8NDG6 1382 aaKnown RBP35.73■■■■□ 3.31
CBWD3-202ENST00000377342 RUSC2Q8N2Y8 1516 aa35.72■■■■□ 3.31
CBWD3-202ENST00000377342 AQRO60306 1485 aaKnown RBP eCLIP35.69■■■■□ 3.3
CBWD3-202ENST00000377342 KIF27Q86VH2 1401 aa35.68■■■■□ 3.3
CBWD3-202ENST00000377342 PBRM1Q86U86 1689 aa35.67■■■■□ 3.3
CBWD3-202ENST00000377342 GAPVD1Q14C86 1478 aa35.66■■■■□ 3.3
CBWD3-202ENST00000377342 EEA1Q15075 1411 aa35.53■■■■□ 3.28
CBWD3-202ENST00000377342 GRIN2BQ13224 1484 aa35.52■■■■□ 3.28
CBWD3-202ENST00000377342 ERICH3Q5RHP9 1530 aa35.52■■■■□ 3.28
CBWD3-202ENST00000377342 IGF1RP08069 1367 aa35.43■■■■□ 3.26
CBWD3-202ENST00000377342 SNAPC4Q5SXM2 1469 aa35.42■■■■□ 3.26
CBWD3-202ENST00000377342 CUL7Q14999 1698 aa35.41■■■■□ 3.26
CBWD3-202ENST00000377342 ADAMTS12P58397 1594 aa35.41■■■■□ 3.26
CBWD3-202ENST00000377342 FAM9AQ8IZU1 332 aaPredicted RBP35.4■■■■□ 3.26
CBWD3-202ENST00000377342 MAGI1Q96QZ7 1491 aaPredicted RBP35.37■■■■□ 3.25
CBWD3-202ENST00000377342 CSRNP3Q8WYN3 585 aa35.31■■■■□ 3.24
CBWD3-202ENST00000377342 PRXQ9BXM0 1461 aa35.27■■■■□ 3.24
CBWD3-202ENST00000377342 FHAD1B1AJZ9 1412 aa35.25■■■■□ 3.23
CBWD3-202ENST00000377342 KIF21BO75037 1637 aa35.24■■■■□ 3.23
CBWD3-202ENST00000377342 SYNJ2O15056 1496 aa35.22■■■■□ 3.23
CBWD3-202ENST00000377342 CARMIL1Q5VZK9 1371 aa35.22■■■■□ 3.23
CBWD3-202ENST00000377342 CHD1O14646 1710 aa35.21■■■■□ 3.23
CBWD3-202ENST00000377342 RAPGEF2Q9Y4G8 1499 aa35.14■■■■□ 3.22
CBWD3-202ENST00000377342 GRIN2AQ12879 1464 aa35.12■■■■□ 3.21
CBWD3-202ENST00000377342 GOLGA3Q08378 1498 aa35.02■■■■□ 3.2
CBWD3-202ENST00000377342 CHMP7Q8WUX9 453 aaPredicted RBP35■■■■□ 3.19
CBWD3-202ENST00000377342 CEP170Q5SW79 1584 aa34.98■■■■□ 3.19
CBWD3-202ENST00000377342 FBLN2P98095 1184 aa34.97■■■■□ 3.19
CBWD3-202ENST00000377342 NUP160Q12769 1436 aa34.93■■■■□ 3.18
CBWD3-202ENST00000377342 CTTNBP2Q8WZ74 1663 aa34.92■■■■□ 3.18
CBWD3-202ENST00000377342 EHMT2Q96KQ7 1210 aa34.89■■■■□ 3.18
CBWD3-202ENST00000377342 CLASP1Q7Z460 1538 aa34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms