Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV40A0A0B4J280 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 KRT18P11-201ENST00000435214 1283 ntBASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 SPI1-203ENST00000533030 661 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 AL034346.1-201ENST00000568244 1277 ntBASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 LINC00526-201ENST00000581067 1875 ntBASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 AC133561.1-201ENST00000568600 2415 ntBASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV40A0A0B4J280 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 AC055733.4-201ENST00000638462 1354 ntBASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TRAV40A0A0B4J280 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAV40A0A0B4J280 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 ID1-201ENST00000376105 1233 ntBASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV40A0A0B4J280 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRAV40A0A0B4J280 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRAV40A0A0B4J280 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
TRAV40A0A0B4J280 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 AC087742.1-201ENST00000575880 1738 ntBASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 CDCA4P2-201ENST00000441182 718 ntBASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 AC011767.1-201ENST00000617410 1153 ntBASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV40A0A0B4J280 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms