RNA–Protein interactions for RNA: ENST00000397408.5

TSPAN4-206, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TSPAN4, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-206ENST00000397408 NISCHQ9Y2I1 1504 aa51.2■■■■■ 5.79
TSPAN4-206ENST00000397408 CCDC180Q9P1Z9 1646 aa45.45■■■■■ 4.87
TSPAN4-206ENST00000397408 ABCC9O60706 1549 aa44.33■■■■■ 4.69
TSPAN4-206ENST00000397408 ZCCHC6Q5VYS8 1495 aaKnown RBP42.71■■■■■ 4.43
TSPAN4-206ENST00000397408 DCAF8L2P0C7V8 631 aa42.71■■■■■ 4.43
TSPAN4-206ENST00000397408 RB1CC1Q8TDY2 1594 aa42.69■■■■■ 4.42
TSPAN4-206ENST00000397408 NACADO15069 1562 aa42.68■■■■■ 4.42
TSPAN4-206ENST00000397408 MYO15BQ96JP2 1530 aa42.46■■■■■ 4.39
TSPAN4-206ENST00000397408 DCAF1Q9Y4B6 1507 aa42.36■■■■■ 4.37
TSPAN4-206ENST00000397408 UNC13AQ9UPW8 1703 aa41.74■■■■■ 4.27
TSPAN4-206ENST00000397408 SCRIBQ14160 1630 aa41.53■■■■■ 4.24
TSPAN4-206ENST00000397408 PABPN1Q86U42 306 aaKnown RBP eCLIP41.44■■■■■ 4.225e-10■■■□□ 17.3
TSPAN4-206ENST00000397408 BICRAQ9NZM4 1560 aa41.4■■■■■ 4.22
TSPAN4-206ENST00000397408 SHROOM4Q9ULL8 1493 aa40.97■■■■■ 4.15
TSPAN4-206ENST00000397408 DNAJC5BQ9UF47 199 aa40.48■■■■■ 4.07
TSPAN4-206ENST00000397408 EIF4G1Q04637 1599 aaKnown RBP40.31■■■■■ 4.04
TSPAN4-206ENST00000397408 CC2D2AQ9P2K1 1620 aa40.09■■■■■ 4.01
TSPAN4-206ENST00000397408 CECR2Q9BXF3 1484 aa39.89■■■■□ 3.98
TSPAN4-206ENST00000397408 SMARCA4P51532 1647 aa39.71■■■■□ 3.95
TSPAN4-206ENST00000397408 BAZ1AQ9NRL2 1556 aaPredicted RBP39.69■■■■□ 3.94
TSPAN4-206ENST00000397408 MROH2BQ7Z745 1585 aa39.48■■■■□ 3.91
TSPAN4-206ENST00000397408 ATAD2BQ9ULI0 1458 aa39.44■■■■□ 3.9
TSPAN4-206ENST00000397408 SMARCA2P51531 1590 aa39.4■■■■□ 3.9
TSPAN4-206ENST00000397408 NCAPD3P42695 1498 aa39.36■■■■□ 3.89
TSPAN4-206ENST00000397408 PEG3Q9GZU2 1588 aa39.29■■■■□ 3.88
TSPAN4-206ENST00000397408 HMGXB3Q12766 1538 aa39.22■■■■□ 3.87
TSPAN4-206ENST00000397408 BAZ1BQ9UIG0 1483 aaKnown RBP39.14■■■■□ 3.86
TSPAN4-206ENST00000397408 RSF1Q96T23 1441 aaPredicted RBP39.08■■■■□ 3.85
TSPAN4-206ENST00000397408 WIZO95785 1651 aa39.07■■■■□ 3.85
TSPAN4-206ENST00000397408 TOP2AP11388 1531 aaKnown RBP38.67■■■■□ 3.78
TSPAN4-206ENST00000397408 NESP48681 1621 aa38.41■■■■□ 3.74
TSPAN4-206ENST00000397408 LAMC3Q9Y6N6 1575 aa38.32■■■■□ 3.72
TSPAN4-206ENST00000397408 SUPT5HO00267 1087 aaKnown RBP38.23■■■■□ 3.71
TSPAN4-206ENST00000397408 CADPSQ9ULU8 1353 aa38.23■■■■□ 3.71
TSPAN4-206ENST00000397408 ERCC6Q03468 1493 aa38.2■■■■□ 3.71
TSPAN4-206ENST00000397408 CCDC88BA6NC98 1476 aa38.19■■■■□ 3.7
TSPAN4-206ENST00000397408 CFTRP13569 1480 aa38.05■■■■□ 3.68
TSPAN4-206ENST00000397408 PDS5BQ9NTI5 1447 aa38.05■■■■□ 3.68
TSPAN4-206ENST00000397408 KIF21AQ7Z4S6 1674 aa37.96■■■■□ 3.67
TSPAN4-206ENST00000397408 FANCD2Q9BXW9 1451 aa37.83■■■■□ 3.65
TSPAN4-206ENST00000397408 PRDM2Q13029 1718 aa37.8■■■■□ 3.64
TSPAN4-206ENST00000397408 THOC2Q8NI27 1593 aaKnown RBP37.79■■■■□ 3.64
TSPAN4-206ENST00000397408 CEP164Q9UPV0 1460 aa37.77■■■■□ 3.64
TSPAN4-206ENST00000397408 CUX2O14529 1486 aa37.7■■■■□ 3.63
TSPAN4-206ENST00000397408 MRC2Q9UBG0 1479 aa37.67■■■■□ 3.62
TSPAN4-206ENST00000397408 WDR62O43379 1518 aa37.55■■■■□ 3.6
TSPAN4-206ENST00000397408 URB2Q14146 1524 aaKnown RBP37.44■■■■□ 3.58
TSPAN4-206ENST00000397408 TOPBP1Q92547 1522 aa37.24■■■■□ 3.55
TSPAN4-206ENST00000397408 DNMBPQ6XZF7 1577 aa37.22■■■■□ 3.55
TSPAN4-206ENST00000397408 ABCC8Q09428 1581 aa37.21■■■■□ 3.55
TSPAN4-206ENST00000397408 CUX1P39880 1505 aa37.04■■■■□ 3.52
TSPAN4-206ENST00000397408 IFT140Q96RY7 1462 aa36.95■■■■□ 3.51
TSPAN4-206ENST00000397408 POLA1P09884 1462 aaPredicted RBP36.94■■■■□ 3.5
TSPAN4-206ENST00000397408 FGD5Q6ZNL6 1462 aa36.88■■■■□ 3.5
TSPAN4-206ENST00000397408 WRNQ14191 1432 aaPredicted RBP eCLIP36.86■■■■□ 3.49
TSPAN4-206ENST00000397408 TARBP1Q13395 1621 aaKnown RBP36.81■■■■□ 3.48
TSPAN4-206ENST00000397408 ZNF608Q9ULD9 1512 aaPredicted RBP36.79■■■■□ 3.48
TSPAN4-206ENST00000397408 RAD54L2Q9Y4B4 1467 aa36.78■■■■□ 3.48
TSPAN4-206ENST00000397408 SYNJ1O43426 1573 aa36.77■■■■□ 3.48
TSPAN4-206ENST00000397408 SOGA1O94964 1423 aa36.77■■■■□ 3.48
TSPAN4-206ENST00000397408 TOP2BQ02880 1626 aa36.75■■■■□ 3.47
TSPAN4-206ENST00000397408 BIVM-ERCC5R4GMW8 1640 aa36.75■■■■□ 3.47
TSPAN4-206ENST00000397408 EIF4G3O43432 1585 aaKnown RBP36.67■■■■□ 3.46
TSPAN4-206ENST00000397408 AQRO60306 1485 aaKnown RBP eCLIP36.59■■■■□ 3.454e-8■■■■■ 31.9
TSPAN4-206ENST00000397408 WDR97A6NE52 1622 aa36.57■■■■□ 3.44
TSPAN4-206ENST00000397408 TDRD9Q8NDG6 1382 aaKnown RBP36.56■■■■□ 3.44
TSPAN4-206ENST00000397408 ABCA10Q8WWZ4 1543 aa36.51■■■■□ 3.44
TSPAN4-206ENST00000397408 ABCA5Q8WWZ7 1642 aa36.38■■■■□ 3.41
TSPAN4-206ENST00000397408 GAPVD1Q14C86 1478 aa36.36■■■■□ 3.41
TSPAN4-206ENST00000397408 GRIN2BQ13224 1484 aa36.33■■■■□ 3.41
TSPAN4-206ENST00000397408 DNAJC5Q9H3Z4 198 aa36.3■■■■□ 3.4
TSPAN4-206ENST00000397408 PBRM1Q86U86 1689 aa36.29■■■■□ 3.4
TSPAN4-206ENST00000397408 SNAPC4Q5SXM2 1469 aa36.29■■■■□ 3.4
TSPAN4-206ENST00000397408 MAGI1Q96QZ7 1491 aaPredicted RBP36.22■■■■□ 3.39
TSPAN4-206ENST00000397408 CHD1O14646 1710 aa36.17■■■■□ 3.38
TSPAN4-206ENST00000397408 OSCARQ8IYS5 282 aa36.14■■■■□ 3.38
TSPAN4-206ENST00000397408 FBLN2P98095 1184 aa36.11■■■■□ 3.37
TSPAN4-206ENST00000397408 SYNJ2O15056 1496 aa36.08■■■■□ 3.37
TSPAN4-206ENST00000397408 ERICH3Q5RHP9 1530 aa36.08■■■■□ 3.37
TSPAN4-206ENST00000397408 TRIM41Q8WV44 630 aa36.08■■■■□ 3.37
TSPAN4-206ENST00000397408 KIF27Q86VH2 1401 aa36.07■■■■□ 3.36
TSPAN4-206ENST00000397408 ADAMTS12P58397 1594 aa36.03■■■■□ 3.36
TSPAN4-206ENST00000397408 CHMP7Q8WUX9 453 aaPredicted RBP36.03■■■■□ 3.36
TSPAN4-206ENST00000397408 FHAD1B1AJZ9 1412 aa35.94■■■■□ 3.34
TSPAN4-206ENST00000397408 GRIN2AQ12879 1464 aa35.88■■■■□ 3.33
TSPAN4-206ENST00000397408 IGF1RP08069 1367 aa35.87■■■■□ 3.33
TSPAN4-206ENST00000397408 CUL7Q14999 1698 aa35.8■■■■□ 3.32
TSPAN4-206ENST00000397408 RUSC2Q8N2Y8 1516 aa35.8■■■■□ 3.32
TSPAN4-206ENST00000397408 CLASP1Q7Z460 1538 aa35.76■■■■□ 3.32
TSPAN4-206ENST00000397408 CHIC1Q5VXU3 224 aa35.75■■■■□ 3.31
TSPAN4-206ENST00000397408 CEP170Q5SW79 1584 aa35.7■■■■□ 3.31
TSPAN4-206ENST00000397408 NUP160Q12769 1436 aa35.7■■■■□ 3.3
TSPAN4-206ENST00000397408 CARMIL1Q5VZK9 1371 aa35.68■■■■□ 3.3
TSPAN4-206ENST00000397408 ARHGEF11O15085 1522 aa35.61■■■■□ 3.29
TSPAN4-206ENST00000397408 RIMBP3CA6NJZ7 1639 aa35.6■■■■□ 3.29
TSPAN4-206ENST00000397408 RIMBP3BA6NNM3 1639 aa35.6■■■■□ 3.29
TSPAN4-206ENST00000397408 RIMBP3Q9UFD9 1639 aa35.6■■■■□ 3.29
TSPAN4-206ENST00000397408 RAPGEF2Q9Y4G8 1499 aa35.49■■■■□ 3.27
TSPAN4-206ENST00000397408 EEA1Q15075 1411 aa35.48■■■■□ 3.27
TSPAN4-206ENST00000397408 SHROOM2Q13796 1616 aa35.41■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms