Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 AC123595.1-201ENST00000440769 1046 ntBASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CLDN16Q9Y5I7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 AC087623.3-201ENST00000607047 1098 ntBASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN16Q9Y5I7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 AC242852.2-201ENST00000615738 1807 ntBASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN16Q9Y5I7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 TERF1P2-201ENST00000583350 1212 ntBASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN16Q9Y5I7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN16Q9Y5I7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 AP004607.7-201ENST00000527152 1677 ntBASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 ECEL1P1-201ENST00000373592 1742 ntBASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 CCDC92B-201ENST00000575506 885 ntBASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.16■□□□□ 0.82
CLDN16Q9Y5I7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN16Q9Y5I7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CLDN16Q9Y5I7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms