Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDC42SE1Q9NRR8 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC14.31□□□□□ -0.12
CDC42SE1Q9NRR8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDC42SE1Q9NRR8 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CDC42SE1Q9NRR8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDC42SE1Q9NRR8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC14.27□□□□□ -0.12
CDC42SE1Q9NRR8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC14.27□□□□□ -0.12
CDC42SE1Q9NRR8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC14.27□□□□□ -0.12
CDC42SE1Q9NRR8 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDC42SE1Q9NRR8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDC42SE1Q9NRR8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC14.27□□□□□ -0.13
CDC42SE1Q9NRR8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDC42SE1Q9NRR8 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDC42SE1Q9NRR8 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDC42SE1Q9NRR8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDC42SE1Q9NRR8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDC42SE1Q9NRR8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CDC42SE1Q9NRR8 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDC42SE1Q9NRR8 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDC42SE1Q9NRR8 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CDC42SE1Q9NRR8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDC42SE1Q9NRR8 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CDC42SE1Q9NRR8 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDC42SE1Q9NRR8 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDC42SE1Q9NRR8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDC42SE1Q9NRR8 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDC42SE1Q9NRR8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDC42SE1Q9NRR8 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDC42SE1Q9NRR8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDC42SE1Q9NRR8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
CDC42SE1Q9NRR8 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CDC42SE1Q9NRR8 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDC42SE1Q9NRR8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
CDC42SE1Q9NRR8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CDC42SE1Q9NRR8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDC42SE1Q9NRR8 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CDC42SE1Q9NRR8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC14.05□□□□□ -0.16
CDC42SE1Q9NRR8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms