Protein–RNA interactions for Protein: Q5S007

LRRK2, Leucine-rich repeat serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 2,527 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK2Q5S007 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
LRRK2Q5S007 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRRK2Q5S007 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.61■■□□□ 1.53
LRRK2Q5S007 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.6■■□□□ 1.53
LRRK2Q5S007 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.6■■□□□ 1.53
LRRK2Q5S007 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.59■■□□□ 1.53
LRRK2Q5S007 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LRRK2Q5S007 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.57■■□□□ 1.52
LRRK2Q5S007 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.57■■□□□ 1.52
LRRK2Q5S007 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.56■■□□□ 1.52
LRRK2Q5S007 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.56■■□□□ 1.52
LRRK2Q5S007 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.55■■□□□ 1.52
LRRK2Q5S007 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
LRRK2Q5S007 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
LRRK2Q5S007 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
LRRK2Q5S007 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
LRRK2Q5S007 DUX4L29-201ENST00000425409 679 ntBASIC24.53■■□□□ 1.52
LRRK2Q5S007 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
LRRK2Q5S007 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
LRRK2Q5S007 ILK-212ENST00000532063 1617 ntTSL 2 BASIC24.52■■□□□ 1.52
LRRK2Q5S007 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.52■■□□□ 1.52
LRRK2Q5S007 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
LRRK2Q5S007 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
LRRK2Q5S007 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
LRRK2Q5S007 CR559946.2-201ENST00000623684 991 ntBASIC24.51■■□□□ 1.51
LRRK2Q5S007 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
LRRK2Q5S007 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
LRRK2Q5S007 AC016575.1-201ENST00000607026 382 ntBASIC24.49■■□□□ 1.51
LRRK2Q5S007 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
LRRK2Q5S007 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
LRRK2Q5S007 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.47■■□□□ 1.51
LRRK2Q5S007 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.47■■□□□ 1.51
LRRK2Q5S007 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
LRRK2Q5S007 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.44■■□□□ 1.5
LRRK2Q5S007 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
LRRK2Q5S007 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.43■■□□□ 1.5
LRRK2Q5S007 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.43■■□□□ 1.5
LRRK2Q5S007 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.43■■□□□ 1.5
LRRK2Q5S007 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRK2Q5S007 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRK2Q5S007 AC021231.2-201ENST00000594613 730 ntBASIC24.42■■□□□ 1.5
LRRK2Q5S007 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
LRRK2Q5S007 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRRK2Q5S007 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.4■■□□□ 1.5
LRRK2Q5S007 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
LRRK2Q5S007 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
LRRK2Q5S007 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRK2Q5S007 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.38■■□□□ 1.49
LRRK2Q5S007 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
LRRK2Q5S007 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.37■■□□□ 1.49
LRRK2Q5S007 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.37■■□□□ 1.49
LRRK2Q5S007 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.36■■□□□ 1.49
LRRK2Q5S007 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.36■■□□□ 1.49
LRRK2Q5S007 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
LRRK2Q5S007 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
LRRK2Q5S007 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.35■■□□□ 1.49
LRRK2Q5S007 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
LRRK2Q5S007 RARRES2P2-201ENST00000394842 485 ntBASIC24.34■■□□□ 1.49
LRRK2Q5S007 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LRRK2Q5S007 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
LRRK2Q5S007 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.32■■□□□ 1.48
LRRK2Q5S007 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
LRRK2Q5S007 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
LRRK2Q5S007 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRK2Q5S007 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRK2Q5S007 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRRK2Q5S007 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
LRRK2Q5S007 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
LRRK2Q5S007 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
LRRK2Q5S007 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
LRRK2Q5S007 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRRK2Q5S007 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRRK2Q5S007 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.23■■□□□ 1.47
LRRK2Q5S007 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.23■■□□□ 1.47
LRRK2Q5S007 LINC01971-201ENST00000617888 1048 ntBASIC24.23■■□□□ 1.47
LRRK2Q5S007 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRRK2Q5S007 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRRK2Q5S007 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
LRRK2Q5S007 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.23■■□□□ 1.47
LRRK2Q5S007 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
LRRK2Q5S007 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.21■■□□□ 1.47
LRRK2Q5S007 ABHD17AP5-201ENST00000580133 923 ntBASIC24.2■■□□□ 1.46
LRRK2Q5S007 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.19■■□□□ 1.46
LRRK2Q5S007 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRK2Q5S007 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.18■■□□□ 1.46
LRRK2Q5S007 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.17■■□□□ 1.46
LRRK2Q5S007 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
LRRK2Q5S007 DUX4L11-201ENST00000611504 1267 ntBASIC24.17■■□□□ 1.46
LRRK2Q5S007 DUX4L12-201ENST00000614593 1267 ntBASIC24.17■■□□□ 1.46
LRRK2Q5S007 DUX4L14-201ENST00000621227 1267 ntBASIC24.17■■□□□ 1.46
LRRK2Q5S007 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRK2Q5S007 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
LRRK2Q5S007 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.16■■□□□ 1.46
LRRK2Q5S007 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.15■■□□□ 1.46
LRRK2Q5S007 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRRK2Q5S007 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
LRRK2Q5S007 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
LRRK2Q5S007 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
LRRK2Q5S007 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRRK2Q5S007 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms