Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
CBX4O00257 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CBX4O00257 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
CBX4O00257 WASH5P-204ENST00000632292 975 ntBASIC27.81■■■□□ 2.04
CBX4O00257 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC27.8■■■□□ 2.04
CBX4O00257 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.8■■■□□ 2.04
CBX4O00257 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CBX4O00257 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC27.8■■■□□ 2.04
CBX4O00257 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
CBX4O00257 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
CBX4O00257 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
CBX4O00257 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
CBX4O00257 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.77■■■□□ 2.04
CBX4O00257 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CBX4O00257 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CBX4O00257 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CBX4O00257 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC27.74■■■□□ 2.03
CBX4O00257 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CBX4O00257 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
CBX4O00257 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
CBX4O00257 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CBX4O00257 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.71■■■□□ 2.03
CBX4O00257 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
CBX4O00257 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
CBX4O00257 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
CBX4O00257 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.65■■■□□ 2.02
CBX4O00257 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CBX4O00257 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
CBX4O00257 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
CBX4O00257 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC27.64■■■□□ 2.01
CBX4O00257 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CBX4O00257 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC27.61■■■□□ 2.01
CBX4O00257 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
CBX4O00257 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
CBX4O00257 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC27.6■■■□□ 2.01
CBX4O00257 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
CBX4O00257 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
CBX4O00257 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC27.57■■■□□ 2
CBX4O00257 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC27.57■■■□□ 2
CBX4O00257 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.56■■■□□ 2
CBX4O00257 HNRNPLP2-201ENST00000568980 1570 ntBASIC27.56■■■□□ 2
CBX4O00257 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.55■■■□□ 2
CBX4O00257 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC27.55■■■□□ 2
CBX4O00257 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC27.55■■■□□ 2
CBX4O00257 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
CBX4O00257 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.53■■■□□ 2
CBX4O00257 MIR762-201ENST00000390236 83 ntBASIC27.52■■■□□ 2
CBX4O00257 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
CBX4O00257 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
CBX4O00257 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CBX4O00257 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.49■■□□□ 1.99
CBX4O00257 AL162393.1-201ENST00000437852 946 ntBASIC27.48■■□□□ 1.99
CBX4O00257 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CBX4O00257 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CBX4O00257 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
CBX4O00257 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
CBX4O00257 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CBX4O00257 AP006261.1-201ENST00000584783 668 ntBASIC27.46■■□□□ 1.99
CBX4O00257 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.46■■□□□ 1.99
CBX4O00257 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CBX4O00257 NRG1-221ENST00000614767 762 ntTSL 5 BASIC27.44■■□□□ 1.98
CBX4O00257 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
CBX4O00257 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC27.43■■□□□ 1.98
CBX4O00257 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CBX4O00257 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC27.43■■□□□ 1.98
CBX4O00257 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CBX4O00257 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CBX4O00257 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CBX4O00257 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
CBX4O00257 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CBX4O00257 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
CBX4O00257 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CBX4O00257 AC005559.1-201ENST00000589661 871 ntBASIC27.4■■□□□ 1.98
CBX4O00257 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CBX4O00257 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
CBX4O00257 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
CBX4O00257 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CBX4O00257 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.39■■□□□ 1.98
CBX4O00257 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CBX4O00257 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CBX4O00257 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.39■■□□□ 1.98
CBX4O00257 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC27.39■■□□□ 1.98
CBX4O00257 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CBX4O00257 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.97
CBX4O00257 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CBX4O00257 MIR3665-201ENST00000578708 105 ntBASIC27.38■■□□□ 1.97
CBX4O00257 AL161658.1-201ENST00000623641 1967 ntBASIC27.37■■□□□ 1.97
CBX4O00257 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CBX4O00257 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.37■■□□□ 1.97
CBX4O00257 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
CBX4O00257 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CBX4O00257 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CBX4O00257 DUX4L28-201ENST00000623687 678 ntBASIC27.35■■□□□ 1.97
CBX4O00257 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CBX4O00257 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC27.34■■□□□ 1.97
CBX4O00257 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC27.34■■□□□ 1.97
CBX4O00257 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CBX4O00257 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.33■■□□□ 1.97
CBX4O00257 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
CBX4O00257 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms