Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MMP28Q9H239 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
MMP28Q9H239 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
MMP28Q9H239 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MMP28Q9H239 AC010542.4-201ENST00000563151 1910 ntBASIC19.14■□□□□ 0.65
MMP28Q9H239 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.14■□□□□ 0.65
MMP28Q9H239 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MMP28Q9H239 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP28Q9H239 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MMP28Q9H239 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP28Q9H239 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP28Q9H239 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MMP28Q9H239 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.13■□□□□ 0.65
MMP28Q9H239 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
MMP28Q9H239 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.13■□□□□ 0.65
MMP28Q9H239 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
MMP28Q9H239 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
MMP28Q9H239 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.13■□□□□ 0.65
MMP28Q9H239 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 AC010980.1-201ENST00000587192 1142 ntBASIC19.13■□□□□ 0.65
MMP28Q9H239 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.13■□□□□ 0.65
MMP28Q9H239 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.13■□□□□ 0.65
MMP28Q9H239 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MMP28Q9H239 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP28Q9H239 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.12■□□□□ 0.65
MMP28Q9H239 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP28Q9H239 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP28Q9H239 AC022616.5-201ENST00000518796 181 ntBASIC19.12■□□□□ 0.65
MMP28Q9H239 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP28Q9H239 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.12■□□□□ 0.65
MMP28Q9H239 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
MMP28Q9H239 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MMP28Q9H239 LINC01521-201ENST00000504184 1943 ntBASIC19.12■□□□□ 0.65
MMP28Q9H239 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP28Q9H239 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.11■□□□□ 0.65
MMP28Q9H239 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MMP28Q9H239 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MMP28Q9H239 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MMP28Q9H239 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
MMP28Q9H239 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.1■□□□□ 0.65
MMP28Q9H239 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MMP28Q9H239 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP28Q9H239 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MMP28Q9H239 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.1■□□□□ 0.65
MMP28Q9H239 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.1■□□□□ 0.65
MMP28Q9H239 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.1■□□□□ 0.65
MMP28Q9H239 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MMP28Q9H239 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
MMP28Q9H239 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
MMP28Q9H239 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.1■□□□□ 0.65
MMP28Q9H239 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.09■□□□□ 0.65
MMP28Q9H239 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.09■□□□□ 0.65
MMP28Q9H239 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
MMP28Q9H239 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.09■□□□□ 0.65
MMP28Q9H239 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP28Q9H239 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MMP28Q9H239 PVT1_1.1-201ENST00000615125 194 ntBASIC19.09■□□□□ 0.65
MMP28Q9H239 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.09■□□□□ 0.65
MMP28Q9H239 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP28Q9H239 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms