Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CLDN16Q9Y5I7 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLDN16Q9Y5I7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN16Q9Y5I7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 AP005435.1-201ENST00000529293 1178 ntBASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.56■□□□□ 0.88
CLDN16Q9Y5I7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 AC019069.1-201ENST00000610008 1333 ntBASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 ZNRF2P3-201ENST00000424200 374 ntBASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 AC087742.1-201ENST00000575880 1738 ntBASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.55■□□□□ 0.88
CLDN16Q9Y5I7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 AC105265.2-201ENST00000467189 838 ntBASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.54■□□□□ 0.88
CLDN16Q9Y5I7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 IGHV3-19-201ENST00000521488 291 ntBASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 AC126544.1-201ENST00000580842 1059 ntBASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 LINC01960-201ENST00000563759 1884 ntBASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 C1orf229-201ENST00000623686 2258 ntBASIC20.53■□□□□ 0.88
CLDN16Q9Y5I7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.52■□□□□ 0.88
CLDN16Q9Y5I7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN16Q9Y5I7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN16Q9Y5I7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN16Q9Y5I7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN16Q9Y5I7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN16Q9Y5I7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN16Q9Y5I7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CLDN16Q9Y5I7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN16Q9Y5I7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN16Q9Y5I7 AC068587.7-201ENST00000641602 218 ntBASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms