Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS9D1Q9Y2B5 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS9D1Q9Y2B5 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
VPS9D1Q9Y2B5 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS9D1Q9Y2B5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS9D1Q9Y2B5 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 DUX4L19-201ENST00000557448 1267 ntBASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VPS9D1Q9Y2B5 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 AC006455.2-201ENST00000429931 906 ntBASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS9D1Q9Y2B5 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS9D1Q9Y2B5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 LINC00526-201ENST00000581067 1875 ntBASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 AL138724.1-201ENST00000606771 1088 ntBASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS9D1Q9Y2B5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 MIR3181-201ENST00000578512 73 ntBASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 CA15P2-201ENST00000611168 834 ntBASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.77■■□□□ 1.08
VPS9D1Q9Y2B5 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
VPS9D1Q9Y2B5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
VPS9D1Q9Y2B5 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS9D1Q9Y2B5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS9D1Q9Y2B5 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms