Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SCUBE3Q8IX30 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SCUBE3Q8IX30 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.14■■□□□ 1.3
SCUBE3Q8IX30 SLC47A1P1-202ENST00000449666 945 ntBASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 AC133561.4-201ENST00000566112 224 ntBASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.14■■□□□ 1.29
SCUBE3Q8IX30 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 EDA-201ENST00000338901 1233 ntBASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 OR2I1P-207ENST00000453522 948 ntBASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 AL031432.3-201ENST00000607698 485 ntBASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
SCUBE3Q8IX30 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 AL355001.2-201ENST00000620617 1191 ntBASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.12■■□□□ 1.29
SCUBE3Q8IX30 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 AC008764.7-201ENST00000593779 1081 ntBASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 LINC01960-201ENST00000563759 1884 ntBASIC23.11■■□□□ 1.29
SCUBE3Q8IX30 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 AC233992.3-201ENST00000607491 485 ntBASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 AC005837.3-201ENST00000612163 286 ntBASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SCUBE3Q8IX30 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 BX842568.3-201ENST00000418104 571 ntBASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 SUDS3P1-201ENST00000505831 966 ntBASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SCUBE3Q8IX30 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 AC087742.1-201ENST00000575880 1738 ntBASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 AL136967.2-201ENST00000623968 743 ntBASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
SCUBE3Q8IX30 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.08■■□□□ 1.28
SCUBE3Q8IX30 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SCUBE3Q8IX30 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms