Protein–RNA interactions for Protein: P22090

RPS4Y1, 40S ribosomal protein S4, Y isoform 1, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y1P22090 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPS4Y1P22090 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.21■□□□□ 0.83
RPS4Y1P22090 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.21■□□□□ 0.83
RPS4Y1P22090 AC099791.2-201ENST00000605725 427 ntBASIC20.21■□□□□ 0.83
RPS4Y1P22090 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPS4Y1P22090 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RPS4Y1P22090 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.21■□□□□ 0.83
RPS4Y1P22090 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPS4Y1P22090 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.21■□□□□ 0.83
RPS4Y1P22090 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 AC137767.1-201ENST00000602918 1920 ntBASIC20.2■□□□□ 0.82
RPS4Y1P22090 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 AC133637.1-201ENST00000624115 1537 ntBASIC20.2■□□□□ 0.82
RPS4Y1P22090 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPS4Y1P22090 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.2■□□□□ 0.82
RPS4Y1P22090 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 pRNA.6-201ENST00000610482 90 ntBASIC20.19■□□□□ 0.82
RPS4Y1P22090 pRNA.5-201ENST00000612139 90 ntBASIC20.19■□□□□ 0.82
RPS4Y1P22090 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 pRNA.11-201ENST00000618423 90 ntBASIC20.19■□□□□ 0.82
RPS4Y1P22090 pRNA.13-201ENST00000619112 90 ntBASIC20.19■□□□□ 0.82
RPS4Y1P22090 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPS4Y1P22090 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RPS4Y1P22090 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.18■□□□□ 0.82
RPS4Y1P22090 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RPS4Y1P22090 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RPS4Y1P22090 LINC00565-201ENST00000562710 2331 ntBASIC20.18■□□□□ 0.82
RPS4Y1P22090 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.18■□□□□ 0.82
RPS4Y1P22090 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.18■□□□□ 0.82
RPS4Y1P22090 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPS4Y1P22090 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RPS4Y1P22090 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.17■□□□□ 0.82
RPS4Y1P22090 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RPS4Y1P22090 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.17■□□□□ 0.82
RPS4Y1P22090 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 SRD5A1P1-201ENST00000442297 786 ntBASIC20.17■□□□□ 0.82
RPS4Y1P22090 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.17■□□□□ 0.82
RPS4Y1P22090 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RPS4Y1P22090 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RPS4Y1P22090 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RPS4Y1P22090 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 AL031602.1-201ENST00000633169 911 ntBASIC20.16■□□□□ 0.82
RPS4Y1P22090 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RPS4Y1P22090 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPS4Y1P22090 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPS4Y1P22090 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPS4Y1P22090 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPS4Y1P22090 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.15■□□□□ 0.82
RPS4Y1P22090 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.15■□□□□ 0.82
RPS4Y1P22090 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.15■□□□□ 0.82
RPS4Y1P22090 MIR3181-201ENST00000578512 73 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms