Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
MMP28Q9H239 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
MMP28Q9H239 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
MMP28Q9H239 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.36■□□□□ 0.69
MMP28Q9H239 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
MMP28Q9H239 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.36■□□□□ 0.69
MMP28Q9H239 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MMP28Q9H239 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MMP28Q9H239 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MMP28Q9H239 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.36■□□□□ 0.69
MMP28Q9H239 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
MMP28Q9H239 RPS2P7-201ENST00000447334 885 ntBASIC19.36■□□□□ 0.69
MMP28Q9H239 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.36■□□□□ 0.69
MMP28Q9H239 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MMP28Q9H239 AC005229.4-201ENST00000610085 2198 ntBASIC19.36■□□□□ 0.69
MMP28Q9H239 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.36■□□□□ 0.69
MMP28Q9H239 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
MMP28Q9H239 AL391422.3-201ENST00000603791 2761 ntBASIC19.35■□□□□ 0.69
MMP28Q9H239 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MMP28Q9H239 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.35■□□□□ 0.69
MMP28Q9H239 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.35■□□□□ 0.69
MMP28Q9H239 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MMP28Q9H239 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MMP28Q9H239 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.34■□□□□ 0.69
MMP28Q9H239 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MMP28Q9H239 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
MMP28Q9H239 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MMP28Q9H239 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MMP28Q9H239 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.34■□□□□ 0.69
MMP28Q9H239 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.34■□□□□ 0.69
MMP28Q9H239 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MMP28Q9H239 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MMP28Q9H239 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MMP28Q9H239 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
MMP28Q9H239 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
MMP28Q9H239 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MMP28Q9H239 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
MMP28Q9H239 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
MMP28Q9H239 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
MMP28Q9H239 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.33■□□□□ 0.69
MMP28Q9H239 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MMP28Q9H239 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
MMP28Q9H239 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
MMP28Q9H239 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MMP28Q9H239 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MMP28Q9H239 AC087393.1-201ENST00000582896 145 ntBASIC19.33■□□□□ 0.68
MMP28Q9H239 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MMP28Q9H239 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
MMP28Q9H239 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.33■□□□□ 0.68
MMP28Q9H239 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MMP28Q9H239 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
MMP28Q9H239 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MMP28Q9H239 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MMP28Q9H239 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MMP28Q9H239 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
MMP28Q9H239 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.32■□□□□ 0.68
MMP28Q9H239 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.32■□□□□ 0.68
MMP28Q9H239 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
MMP28Q9H239 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.32■□□□□ 0.68
MMP28Q9H239 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.32■□□□□ 0.68
MMP28Q9H239 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
MMP28Q9H239 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
MMP28Q9H239 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
MMP28Q9H239 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP28Q9H239 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
MMP28Q9H239 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.31■□□□□ 0.68
MMP28Q9H239 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.31■□□□□ 0.68
MMP28Q9H239 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 DUX4L18-201ENST00000553347 1267 ntBASIC19.31■□□□□ 0.68
MMP28Q9H239 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MMP28Q9H239 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
MMP28Q9H239 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.31■□□□□ 0.68
MMP28Q9H239 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP28Q9H239 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP28Q9H239 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP28Q9H239 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms