RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 NISCHQ9Y2I1 1504 aa45.79■■■■■ 4.92
SNX3-201ENST00000230085 CCDC180Q9P1Z9 1646 aa40.39■■■■■ 4.06
SNX3-201ENST00000230085 ABCC9O60706 1549 aa39.19■■■■□ 3.86
SNX3-201ENST00000230085 ZCCHC6Q5VYS8 1495 aaKnown RBP38.23■■■■□ 3.71
SNX3-201ENST00000230085 DCAF8L2P0C7V8 631 aa38.21■■■■□ 3.71
SNX3-201ENST00000230085 NACADO15069 1562 aa37.9■■■■□ 3.66
SNX3-201ENST00000230085 DCAF1Q9Y4B6 1507 aa37.83■■■■□ 3.65
SNX3-201ENST00000230085 RB1CC1Q8TDY2 1594 aa37.82■■■■□ 3.64
SNX3-201ENST00000230085 MYO15BQ96JP2 1530 aa37.8■■■■□ 3.64
SNX3-201ENST00000230085 UNC13AQ9UPW8 1703 aa37.03■■■■□ 3.52
SNX3-201ENST00000230085 SCRIBQ14160 1630 aa37.01■■■■□ 3.52
SNX3-201ENST00000230085 PABPN1Q86U42 306 aaKnown RBP eCLIP36.78■■■■□ 3.48
SNX3-201ENST00000230085 BICRAQ9NZM4 1560 aa36.71■■■■□ 3.47
SNX3-201ENST00000230085 SHROOM4Q9ULL8 1493 aa36.62■■■■□ 3.45
SNX3-201ENST00000230085 EIF4G1Q04637 1599 aaKnown RBP35.69■■■■□ 3.3
SNX3-201ENST00000230085 CECR2Q9BXF3 1484 aa35.68■■■■□ 3.3
SNX3-201ENST00000230085 DNAJC5BQ9UF47 199 aa35.6■■■■□ 3.29
SNX3-201ENST00000230085 CC2D2AQ9P2K1 1620 aa35.44■■■■□ 3.26
SNX3-201ENST00000230085 BAZ1AQ9NRL2 1556 aaPredicted RBP35.42■■■■□ 3.26
SNX3-201ENST00000230085 SMARCA4P51532 1647 aa35.41■■■■□ 3.26
SNX3-201ENST00000230085 MROH2BQ7Z745 1585 aa35.34■■■■□ 3.25
SNX3-201ENST00000230085 RSF1Q96T23 1441 aaPredicted RBP35.12■■■■□ 3.21
SNX3-201ENST00000230085 ATAD2BQ9ULI0 1458 aa35.11■■■■□ 3.21
SNX3-201ENST00000230085 SMARCA2P51531 1590 aa35.05■■■■□ 3.2
SNX3-201ENST00000230085 PEG3Q9GZU2 1588 aa35.02■■■■□ 3.2
SNX3-201ENST00000230085 NCAPD3P42695 1498 aa34.99■■■■□ 3.19
SNX3-201ENST00000230085 WIZO95785 1651 aa34.99■■■■□ 3.19
SNX3-201ENST00000230085 BAZ1BQ9UIG0 1483 aaKnown RBP34.84■■■■□ 3.17
SNX3-201ENST00000230085 HMGXB3Q12766 1538 aa34.83■■■■□ 3.17
SNX3-201ENST00000230085 SUPT5HO00267 1087 aaKnown RBP34.71■■■■□ 3.15
SNX3-201ENST00000230085 TOP2AP11388 1531 aaKnown RBP34.57■■■■□ 3.13
SNX3-201ENST00000230085 CCDC88BA6NC98 1476 aa34.23■■■■□ 3.07
SNX3-201ENST00000230085 NESP48681 1621 aa34.08■■■■□ 3.05
SNX3-201ENST00000230085 CADPSQ9ULU8 1353 aa34.03■■■■□ 3.04
SNX3-201ENST00000230085 CHIC1Q5VXU3 224 aa34■■■■□ 3.03
SNX3-201ENST00000230085 LAMC3Q9Y6N6 1575 aa33.97■■■■□ 3.03
SNX3-201ENST00000230085 HRCP23327 699 aa33.94■■■■□ 3.02
SNX3-201ENST00000230085 CFTRP13569 1480 aa33.92■■■■□ 3.02
SNX3-201ENST00000230085 PDS5BQ9NTI5 1447 aa33.75■■■□□ 2.99
SNX3-201ENST00000230085 ERCC6Q03468 1493 aa33.7■■■□□ 2.99
SNX3-201ENST00000230085 PRDM2Q13029 1718 aa33.64■■■□□ 2.98
SNX3-201ENST00000230085 KIF21AQ7Z4S6 1674 aa33.64■■■□□ 2.98
SNX3-201ENST00000230085 FANCD2Q9BXW9 1451 aa33.64■■■□□ 2.98
SNX3-201ENST00000230085 CEP164Q9UPV0 1460 aa33.52■■■□□ 2.96
SNX3-201ENST00000230085 THOC2Q8NI27 1593 aaKnown RBP33.37■■■□□ 2.93
SNX3-201ENST00000230085 MRC2Q9UBG0 1479 aa33.36■■■□□ 2.93
SNX3-201ENST00000230085 URB2Q14146 1524 aaKnown RBP33.28■■■□□ 2.92
SNX3-201ENST00000230085 WDR62O43379 1518 aa33.23■■■□□ 2.91
SNX3-201ENST00000230085 PCGF6Q9BYE7 350 aa33.18■■■□□ 2.9
SNX3-201ENST00000230085 ABCC8Q09428 1581 aa33.16■■■□□ 2.9
SNX3-201ENST00000230085 TOPBP1Q92547 1522 aa33.15■■■□□ 2.9
SNX3-201ENST00000230085 DNMBPQ6XZF7 1577 aa33.12■■■□□ 2.89
SNX3-201ENST00000230085 CUX1P39880 1505 aa33.11■■■□□ 2.89
SNX3-201ENST00000230085 CUX2O14529 1486 aa33.1■■■□□ 2.89
SNX3-201ENST00000230085 WRNQ14191 1432 aaPredicted RBP eCLIP33.08■■■□□ 2.89
SNX3-201ENST00000230085 SYNJ1O43426 1573 aa32.98■■■□□ 2.87
SNX3-201ENST00000230085 TOP2BQ02880 1626 aa32.93■■■□□ 2.86
SNX3-201ENST00000230085 POLA1P09884 1462 aaPredicted RBP32.91■■■□□ 2.86
SNX3-201ENST00000230085 FGD5Q6ZNL6 1462 aa32.91■■■□□ 2.86
SNX3-201ENST00000230085 BIVM-ERCC5R4GMW8 1640 aa32.89■■■□□ 2.86
SNX3-201ENST00000230085 RAD54L2Q9Y4B4 1467 aa32.81■■■□□ 2.84
SNX3-201ENST00000230085 TRIM26Q12899 539 aaPredicted RBP32.81■■■□□ 2.84
SNX3-201ENST00000230085 SOGA1O94964 1423 aa32.8■■■□□ 2.84
SNX3-201ENST00000230085 IFT140Q96RY7 1462 aa32.78■■■□□ 2.84
SNX3-201ENST00000230085 TARBP1Q13395 1621 aaKnown RBP32.74■■■□□ 2.83
SNX3-201ENST00000230085 TRIM41Q8WV44 630 aa32.71■■■□□ 2.83
SNX3-201ENST00000230085 ZNF608Q9ULD9 1512 aaPredicted RBP32.68■■■□□ 2.82
SNX3-201ENST00000230085 LOC105371045A0A1W2PR82 267 aa32.66■■■□□ 2.82
SNX3-201ENST00000230085 PPARGC1BQ86YN6 1023 aaKnown RBP32.64■■■□□ 2.82
SNX3-201ENST00000230085 TDRD9Q8NDG6 1382 aaKnown RBP32.6■■■□□ 2.81
SNX3-201ENST00000230085 ABCA10Q8WWZ4 1543 aa32.59■■■□□ 2.81
SNX3-201ENST00000230085 AQRO60306 1485 aaKnown RBP eCLIP32.57■■■□□ 2.8
SNX3-201ENST00000230085 WDR97A6NE52 1622 aa32.56■■■□□ 2.8
SNX3-201ENST00000230085 ZEB1P37275 1124 aaPredicted RBP32.54■■■□□ 2.8
SNX3-201ENST00000230085 EIF4G3O43432 1585 aaKnown RBP32.51■■■□□ 2.8
SNX3-201ENST00000230085 GAPVD1Q14C86 1478 aa32.42■■■□□ 2.78
SNX3-201ENST00000230085 ABCA5Q8WWZ7 1642 aa32.4■■■□□ 2.78
SNX3-201ENST00000230085 KIF27Q86VH2 1401 aa32.33■■■□□ 2.77
SNX3-201ENST00000230085 GRIN2BQ13224 1484 aa32.32■■■□□ 2.76
SNX3-201ENST00000230085 PBRM1Q86U86 1689 aa32.29■■■□□ 2.76
SNX3-201ENST00000230085 RUSC2Q8N2Y8 1516 aa32.29■■■□□ 2.76
SNX3-201ENST00000230085 SNAPC4Q5SXM2 1469 aa32.23■■■□□ 2.75
SNX3-201ENST00000230085 ERICH3Q5RHP9 1530 aa32.19■■■□□ 2.74
SNX3-201ENST00000230085 IGF1RP08069 1367 aa32.18■■■□□ 2.74
SNX3-201ENST00000230085 MAGI1Q96QZ7 1491 aaPredicted RBP32.16■■■□□ 2.74
SNX3-201ENST00000230085 FBLN2P98095 1184 aa32.12■■■□□ 2.73
SNX3-201ENST00000230085 FAM9AQ8IZU1 332 aaPredicted RBP32.09■■■□□ 2.73
SNX3-201ENST00000230085 CHMP7Q8WUX9 453 aaPredicted RBP32.07■■■□□ 2.72
SNX3-201ENST00000230085 ADAMTS12P58397 1594 aa32.05■■■□□ 2.72
SNX3-201ENST00000230085 SYNJ2O15056 1496 aa32.05■■■□□ 2.72
SNX3-201ENST00000230085 FHAD1B1AJZ9 1412 aa32.04■■■□□ 2.72
SNX3-201ENST00000230085 CHD1O14646 1710 aa32.01■■■□□ 2.72
SNX3-201ENST00000230085 EEA1Q15075 1411 aa32■■■□□ 2.71
SNX3-201ENST00000230085 CARMIL1Q5VZK9 1371 aa31.99■■■□□ 2.71
SNX3-201ENST00000230085 CSRNP3Q8WYN3 585 aa31.99■■■□□ 2.71
SNX3-201ENST00000230085 CUL7Q14999 1698 aa31.98■■■□□ 2.71
SNX3-201ENST00000230085 PELP1Q8IZL8 1130 aaKnown RBP31.94■■■□□ 2.7
SNX3-201ENST00000230085 OSCARQ8IYS5 282 aa31.92■■■□□ 2.7
SNX3-201ENST00000230085 GRIN2AQ12879 1464 aa31.91■■■□□ 2.7
SNX3-201ENST00000230085 PRXQ9BXM0 1461 aa31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms