Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHA1Q9Y5I3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHA1Q9Y5I3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.46■■□□□ 1.67
PCDHA1Q9Y5I3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHA1Q9Y5I3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHA1Q9Y5I3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDHA1Q9Y5I3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDHA1Q9Y5I3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.44■■□□□ 1.66
PCDHA1Q9Y5I3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHA1Q9Y5I3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 TSPY26P-201ENST00000476365 1326 ntBASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 IRS3P-201ENST00000223076 1006 ntBASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHA1Q9Y5I3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA1Q9Y5I3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDHA1Q9Y5I3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA1Q9Y5I3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA1Q9Y5I3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA1Q9Y5I3 IGHV3-19-201ENST00000521488 291 ntBASIC25.4■■□□□ 1.66
PCDHA1Q9Y5I3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDHA1Q9Y5I3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
PCDHA1Q9Y5I3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
PCDHA1Q9Y5I3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
PCDHA1Q9Y5I3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.39■■□□□ 1.66
PCDHA1Q9Y5I3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC25.39■■□□□ 1.66
PCDHA1Q9Y5I3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDHA1Q9Y5I3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.65
PCDHA1Q9Y5I3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHA1Q9Y5I3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHA1Q9Y5I3 AP005435.1-201ENST00000529293 1178 ntBASIC25.38■■□□□ 1.65
PCDHA1Q9Y5I3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC25.38■■□□□ 1.65
PCDHA1Q9Y5I3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.38■■□□□ 1.65
PCDHA1Q9Y5I3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA1Q9Y5I3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.38■■□□□ 1.65
PCDHA1Q9Y5I3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA1Q9Y5I3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms