Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 AC092437.1-201ENST00000624794 1048 ntBASIC17.52■□□□□ 0.4
LINC01006Q8NI28 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LINC01006Q8NI28 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LINC01006Q8NI28 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LINC01006Q8NI28 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.51■□□□□ 0.39
LINC01006Q8NI28 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.51■□□□□ 0.39
LINC01006Q8NI28 LINC01529-204ENST00000636474 1715 ntBASIC17.51■□□□□ 0.39
LINC01006Q8NI28 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.5■□□□□ 0.39
LINC01006Q8NI28 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 AP005435.1-201ENST00000529293 1178 ntBASIC17.5■□□□□ 0.39
LINC01006Q8NI28 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 LINC02228-203ENST00000641970 1355 ntBASIC17.5■□□□□ 0.39
LINC01006Q8NI28 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 AC144652.1-201ENST00000609974 1624 ntBASIC17.5■□□□□ 0.39
LINC01006Q8NI28 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC01006Q8NI28 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 KRT18P14-201ENST00000534205 1250 ntBASIC17.49■□□□□ 0.39
LINC01006Q8NI28 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 TERF1P2-201ENST00000583350 1212 ntBASIC17.49■□□□□ 0.39
LINC01006Q8NI28 NTF6G-201ENST00000591094 616 ntBASIC17.49■□□□□ 0.39
LINC01006Q8NI28 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC01006Q8NI28 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 AC004911.1-201ENST00000416316 871 ntBASIC17.48■□□□□ 0.39
LINC01006Q8NI28 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC01006Q8NI28 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC01006Q8NI28 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms