RNA–Protein interactions for RNA: ENST00000578402.5

LIMD2-205, Transcript of LIM domain containing 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD2, Length 1,534 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-205ENST00000578402 NISCHQ9Y2I1 1504 aa52.31■■■■■ 5.97
LIMD2-205ENST00000578402 CCDC180Q9P1Z9 1646 aa45.78■■■■■ 4.92
LIMD2-205ENST00000578402 ZCCHC6Q5VYS8 1495 aaKnown RBP43.94■■■■■ 4.62
LIMD2-205ENST00000578402 DCAF1Q9Y4B6 1507 aa43.38■■■■■ 4.54
LIMD2-205ENST00000578402 ABCC9O60706 1549 aa43.18■■■■■ 4.5
LIMD2-205ENST00000578402 DCAF8L2P0C7V8 631 aa42.97■■■■■ 4.47
LIMD2-205ENST00000578402 MYO15BQ96JP2 1530 aa42.95■■■■■ 4.47
LIMD2-205ENST00000578402 NACADO15069 1562 aa42.65■■■■■ 4.42
LIMD2-205ENST00000578402 SHROOM4Q9ULL8 1493 aa42.32■■■■■ 4.37
LIMD2-205ENST00000578402 RB1CC1Q8TDY2 1594 aa42.28■■■■■ 4.36
LIMD2-205ENST00000578402 SCRIBQ14160 1630 aa41.9■■■■■ 4.3
LIMD2-205ENST00000578402 UNC13AQ9UPW8 1703 aa41.35■■■■■ 4.21
LIMD2-205ENST00000578402 BICRAQ9NZM4 1560 aa40.95■■■■■ 4.15
LIMD2-205ENST00000578402 SUPT5HO00267 1087 aaKnown RBP40.67■■■■■ 4.1
LIMD2-205ENST00000578402 PABPN1Q86U42 306 aaKnown RBP eCLIP40.62■■■■■ 4.09
LIMD2-205ENST00000578402 CECR2Q9BXF3 1484 aa40.55■■■■■ 4.08
LIMD2-205ENST00000578402 RSF1Q96T23 1441 aaPredicted RBP40.48■■■■■ 4.07
LIMD2-205ENST00000578402 BAZ1AQ9NRL2 1556 aaPredicted RBP40.44■■■■■ 4.06
LIMD2-205ENST00000578402 MROH2BQ7Z745 1585 aa40.34■■■■■ 4.05
LIMD2-205ENST00000578402 DNAJC5BQ9UF47 199 aa40.31■■■■■ 4.04
LIMD2-205ENST00000578402 SMARCA4P51532 1647 aa40.24■■■■■ 4.03
LIMD2-205ENST00000578402 WIZO95785 1651 aa39.99■■■■□ 3.99
LIMD2-205ENST00000578402 PEG3Q9GZU2 1588 aa39.84■■■■□ 3.97
LIMD2-205ENST00000578402 EIF4G1Q04637 1599 aaKnown RBP39.74■■■■□ 3.95
LIMD2-205ENST00000578402 TOP2AP11388 1531 aaKnown RBP39.68■■■■□ 3.94
LIMD2-205ENST00000578402 SMARCA2P51531 1590 aa39.63■■■■□ 3.94
LIMD2-205ENST00000578402 ATAD2BQ9ULI0 1458 aa39.6■■■■□ 3.93
LIMD2-205ENST00000578402 BAZ1BQ9UIG0 1483 aaKnown RBP39.37■■■■□ 3.89
LIMD2-205ENST00000578402 NCAPD3P42695 1498 aa39.33■■■■□ 3.89
LIMD2-205ENST00000578402 HMGXB3Q12766 1538 aa39.31■■■■□ 3.88
LIMD2-205ENST00000578402 CCDC88BA6NC98 1476 aa39.19■■■■□ 3.86
LIMD2-205ENST00000578402 CC2D2AQ9P2K1 1620 aa39.15■■■■□ 3.86
LIMD2-205ENST00000578402 CHIC1Q5VXU3 224 aa38.96■■■■□ 3.83
LIMD2-205ENST00000578402 CFTRP13569 1480 aa38.4■■■■□ 3.74
LIMD2-205ENST00000578402 TRIM41Q8WV44 630 aa38.35■■■■□ 3.73
LIMD2-205ENST00000578402 CADPSQ9ULU8 1353 aa38.27■■■■□ 3.72
LIMD2-205ENST00000578402 ABCC8Q09428 1581 aa38.26■■■■□ 3.72
LIMD2-205ENST00000578402 PRDM2Q13029 1718 aa38.25■■■■□ 3.71
LIMD2-205ENST00000578402 WRNQ14191 1432 aaPredicted RBP eCLIP38.12■■■■□ 3.69
LIMD2-205ENST00000578402 LAMC3Q9Y6N6 1575 aa38.03■■■■□ 3.68
LIMD2-205ENST00000578402 SYNJ1O43426 1573 aa37.95■■■■□ 3.67
LIMD2-205ENST00000578402 TOP2BQ02880 1626 aa37.87■■■■□ 3.65
LIMD2-205ENST00000578402 NESP48681 1621 aa37.86■■■■□ 3.65
LIMD2-205ENST00000578402 BIVM-ERCC5R4GMW8 1640 aa37.86■■■■□ 3.65
LIMD2-205ENST00000578402 FANCD2Q9BXW9 1451 aa37.83■■■■□ 3.65
LIMD2-205ENST00000578402 CUX1P39880 1505 aa37.75■■■■□ 3.63
LIMD2-205ENST00000578402 PDS5BQ9NTI5 1447 aa37.7■■■■□ 3.63
LIMD2-205ENST00000578402 CEP164Q9UPV0 1460 aa37.62■■■■□ 3.61
LIMD2-205ENST00000578402 EEA1Q15075 1411 aa37.61■■■■□ 3.61
LIMD2-205ENST00000578402 SOGA1O94964 1423 aa37.52■■■■□ 3.6
LIMD2-205ENST00000578402 DNMBPQ6XZF7 1577 aa37.52■■■■□ 3.6
LIMD2-205ENST00000578402 FAM9AQ8IZU1 332 aaPredicted RBP37.5■■■■□ 3.59
LIMD2-205ENST00000578402 KIF21AQ7Z4S6 1674 aa37.47■■■■□ 3.59
LIMD2-205ENST00000578402 TOPBP1Q92547 1522 aa37.42■■■■□ 3.58
LIMD2-205ENST00000578402 FGD5Q6ZNL6 1462 aa37.36■■■■□ 3.57
LIMD2-205ENST00000578402 RUSC2Q8N2Y8 1516 aa37.35■■■■□ 3.57
LIMD2-205ENST00000578402 URB2Q14146 1524 aaKnown RBP37.35■■■■□ 3.57
LIMD2-205ENST00000578402 LOC105371045A0A1W2PR82 267 aa37.34■■■■□ 3.57
LIMD2-205ENST00000578402 DNAJC5Q9H3Z4 198 aa37.33■■■■□ 3.57
LIMD2-205ENST00000578402 CSRNP3Q8WYN3 585 aa37.27■■■■□ 3.56
LIMD2-205ENST00000578402 POLA1P09884 1462 aaPredicted RBP37.22■■■■□ 3.55
LIMD2-205ENST00000578402 MRC2Q9UBG0 1479 aa37.22■■■■□ 3.55
LIMD2-205ENST00000578402 KIF27Q86VH2 1401 aa37.19■■■■□ 3.54
LIMD2-205ENST00000578402 KIF21BO75037 1637 aa37.09■■■■□ 3.53
LIMD2-205ENST00000578402 ABCA10Q8WWZ4 1543 aa37.09■■■■□ 3.53
LIMD2-205ENST00000578402 ERCC6Q03468 1493 aa37.09■■■■□ 3.53
LIMD2-205ENST00000578402 CUX2O14529 1486 aa37.07■■■■□ 3.53
LIMD2-205ENST00000578402 WDR62O43379 1518 aa37.05■■■■□ 3.52
LIMD2-205ENST00000578402 RAD54L2Q9Y4B4 1467 aa37.02■■■■□ 3.52
LIMD2-205ENST00000578402 GOLGA3Q08378 1498 aa37.01■■■■□ 3.52
LIMD2-205ENST00000578402 WDR97A6NE52 1622 aa36.99■■■■□ 3.51
LIMD2-205ENST00000578402 THOC2Q8NI27 1593 aaKnown RBP36.95■■■■□ 3.51
LIMD2-205ENST00000578402 PRXQ9BXM0 1461 aa36.92■■■■□ 3.5
LIMD2-205ENST00000578402 ERICH3Q5RHP9 1530 aa36.89■■■■□ 3.5
LIMD2-205ENST00000578402 TARBP1Q13395 1621 aaKnown RBP36.88■■■■□ 3.49
LIMD2-205ENST00000578402 TNIKQ9UKE5 1360 aa36.86■■■■□ 3.49
LIMD2-205ENST00000578402 EHMT2Q96KQ7 1210 aa36.86■■■■□ 3.49
LIMD2-205ENST00000578402 IGF1RP08069 1367 aa36.83■■■■□ 3.49
LIMD2-205ENST00000578402 ABCA5Q8WWZ7 1642 aa36.8■■■■□ 3.48
LIMD2-205ENST00000578402 RAPGEF2Q9Y4G8 1499 aa36.79■■■■□ 3.48
LIMD2-205ENST00000578402 IFT140Q96RY7 1462 aa36.76■■■■□ 3.48
LIMD2-205ENST00000578402 UBTFP17480 764 aaKnown RBP36.71■■■■□ 3.47
LIMD2-205ENST00000578402 GAPVD1Q14C86 1478 aa36.68■■■■□ 3.46
LIMD2-205ENST00000578402 CUL7Q14999 1698 aa36.66■■■■□ 3.46
LIMD2-205ENST00000578402 TDRD9Q8NDG6 1382 aaKnown RBP36.65■■■■□ 3.46
LIMD2-205ENST00000578402 CARMIL1Q5VZK9 1371 aa36.65■■■■□ 3.46
LIMD2-205ENST00000578402 CEP162Q5TB80 1403 aa36.61■■■■□ 3.45
LIMD2-205ENST00000578402 PBRM1Q86U86 1689 aa36.5■■■■□ 3.43
LIMD2-205ENST00000578402 ZNF608Q9ULD9 1512 aaPredicted RBP36.45■■■■□ 3.43
LIMD2-205ENST00000578402 AQRO60306 1485 aaKnown RBP eCLIP36.45■■■■□ 3.43
LIMD2-205ENST00000578402 GRIN2BQ13224 1484 aa36.45■■■■□ 3.42
LIMD2-205ENST00000578402 EIF4G3O43432 1585 aaKnown RBP36.4■■■■□ 3.42
LIMD2-205ENST00000578402 CLIP1P30622 1438 aa36.36■■■■□ 3.41
LIMD2-205ENST00000578402 FHAD1B1AJZ9 1412 aa36.32■■■■□ 3.4
LIMD2-205ENST00000578402 ADAMTS12P58397 1594 aa36.32■■■■□ 3.4
LIMD2-205ENST00000578402 CTTNBP2Q8WZ74 1663 aa36.19■■■■□ 3.38
LIMD2-205ENST00000578402 MAGI1Q96QZ7 1491 aaPredicted RBP36.19■■■■□ 3.38
LIMD2-205ENST00000578402 SNAPC4Q5SXM2 1469 aa36.17■■■■□ 3.38
LIMD2-205ENST00000578402 VPS8Q8N3P4 1428 aa36.06■■■■□ 3.36
LIMD2-205ENST00000578402 ARHGAP35Q9NRY4 1499 aa36.06■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms