Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
POLR2J3Q9H1A7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
POLR2J3Q9H1A7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.64■□□□□ 0.9
POLR2J3Q9H1A7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
POLR2J3Q9H1A7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
POLR2J3Q9H1A7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.64■□□□□ 0.89
POLR2J3Q9H1A7 AC012354.3-201ENST00000623734 483 ntBASIC20.64■□□□□ 0.89
POLR2J3Q9H1A7 LINC00526-201ENST00000581067 1875 ntBASIC20.64■□□□□ 0.89
POLR2J3Q9H1A7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
POLR2J3Q9H1A7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR2J3Q9H1A7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR2J3Q9H1A7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 PKD1P6-201ENST00000343738 4769 ntBASIC20.62■□□□□ 0.89
POLR2J3Q9H1A7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
POLR2J3Q9H1A7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
POLR2J3Q9H1A7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 ECEL1P1-201ENST00000373592 1742 ntBASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 AC079630.1-202ENST00000618127 1840 ntBASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.59■□□□□ 0.89
POLR2J3Q9H1A7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
POLR2J3Q9H1A7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.58■□□□□ 0.88
POLR2J3Q9H1A7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
POLR2J3Q9H1A7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
POLR2J3Q9H1A7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.58■□□□□ 0.88
POLR2J3Q9H1A7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
POLR2J3Q9H1A7 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms