RNA–Protein interactions for RNA: ENST00000393578.7

HMGA2-203, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-203ENST00000393578 NISCHQ9Y2I1 1504 aa49.52■■■■■ 5.52
HMGA2-203ENST00000393578 CCDC180Q9P1Z9 1646 aa43■■■■■ 4.47
HMGA2-203ENST00000393578 ZCCHC6Q5VYS8 1495 aaKnown RBP41.66■■■■■ 4.26
HMGA2-203ENST00000393578 DCAF1Q9Y4B6 1507 aa40.95■■■■■ 4.15
HMGA2-203ENST00000393578 DCAF8L2P0C7V8 631 aa40.81■■■■■ 4.12
HMGA2-203ENST00000393578 SHROOM4Q9ULL8 1493 aa40.62■■■■■ 4.09
HMGA2-203ENST00000393578 ABCC9O60706 1549 aa40.44■■■■■ 4.06
HMGA2-203ENST00000393578 MYO15BQ96JP2 1530 aa40.34■■■■■ 4.05
HMGA2-203ENST00000393578 NACADO15069 1562 aa39.99■■■■□ 3.99
HMGA2-203ENST00000393578 SCRIBQ14160 1630 aa39.6■■■■□ 3.93
HMGA2-203ENST00000393578 RB1CC1Q8TDY2 1594 aa39.57■■■■□ 3.92
HMGA2-203ENST00000393578 SUPT5HO00267 1087 aaKnown RBP39.27■■■■□ 3.88
HMGA2-203ENST00000393578 UNC13AQ9UPW8 1703 aa38.87■■■■□ 3.81
HMGA2-203ENST00000393578 RSF1Q96T23 1441 aaPredicted RBP38.56■■■■□ 3.76
HMGA2-203ENST00000393578 CECR2Q9BXF3 1484 aa38.45■■■■□ 3.75
HMGA2-203ENST00000393578 BICRAQ9NZM4 1560 aa38.41■■■■□ 3.74
HMGA2-203ENST00000393578 MROH2BQ7Z745 1585 aa38.27■■■■□ 3.72
HMGA2-203ENST00000393578 BAZ1AQ9NRL2 1556 aaPredicted RBP38.21■■■■□ 3.71
HMGA2-203ENST00000393578 PABPN1Q86U42 306 aaKnown RBP eCLIP38.17■■■■□ 3.7
HMGA2-203ENST00000393578 SMARCA4P51532 1647 aa37.98■■■■□ 3.67
HMGA2-203ENST00000393578 WIZO95785 1651 aa37.97■■■■□ 3.67
HMGA2-203ENST00000393578 CHIC1Q5VXU3 224 aa37.77■■■■□ 3.64
HMGA2-203ENST00000393578 TOP2AP11388 1531 aaKnown RBP37.58■■■■□ 3.61
HMGA2-203ENST00000393578 PEG3Q9GZU2 1588 aa37.52■■■■□ 3.6
HMGA2-203ENST00000393578 ATAD2BQ9ULI0 1458 aa37.29■■■■□ 3.56
HMGA2-203ENST00000393578 SMARCA2P51531 1590 aa37.28■■■■□ 3.56
HMGA2-203ENST00000393578 CCDC88BA6NC98 1476 aa37.22■■■■□ 3.55
HMGA2-203ENST00000393578 EIF4G1Q04637 1599 aaKnown RBP37.21■■■■□ 3.55
HMGA2-203ENST00000393578 BAZ1BQ9UIG0 1483 aaKnown RBP37.1■■■■□ 3.53
HMGA2-203ENST00000393578 NCAPD3P42695 1498 aa36.93■■■■□ 3.5
HMGA2-203ENST00000393578 TRIM41Q8WV44 630 aa36.91■■■■□ 3.5
HMGA2-203ENST00000393578 HMGXB3Q12766 1538 aa36.89■■■■□ 3.5
HMGA2-203ENST00000393578 CC2D2AQ9P2K1 1620 aa36.63■■■■□ 3.45
HMGA2-203ENST00000393578 ABCC8Q09428 1581 aa36.53■■■■□ 3.44
HMGA2-203ENST00000393578 LOC105371045A0A1W2PR82 267 aa36.34■■■■□ 3.41
HMGA2-203ENST00000393578 WRNQ14191 1432 aaPredicted RBP eCLIP36.27■■■■□ 3.4
HMGA2-203ENST00000393578 FAM9AQ8IZU1 332 aaPredicted RBP36.23■■■■□ 3.39
HMGA2-203ENST00000393578 CFTRP13569 1480 aa36.2■■■■□ 3.39
HMGA2-203ENST00000393578 SYNJ1O43426 1573 aa36.1■■■■□ 3.37
HMGA2-203ENST00000393578 CADPSQ9ULU8 1353 aa36.01■■■■□ 3.35
HMGA2-203ENST00000393578 PRDM2Q13029 1718 aa36.01■■■■□ 3.35
HMGA2-203ENST00000393578 EEA1Q15075 1411 aa35.94■■■■□ 3.34
HMGA2-203ENST00000393578 TOP2BQ02880 1626 aa35.94■■■■□ 3.34
HMGA2-203ENST00000393578 SOGA1O94964 1423 aa35.93■■■■□ 3.34
HMGA2-203ENST00000393578 BIVM-ERCC5R4GMW8 1640 aa35.88■■■■□ 3.33
HMGA2-203ENST00000393578 CUX1P39880 1505 aa35.76■■■■□ 3.32
HMGA2-203ENST00000393578 RUSC2Q8N2Y8 1516 aa35.76■■■■□ 3.32
HMGA2-203ENST00000393578 CSRNP3Q8WYN3 585 aa35.72■■■■□ 3.31
HMGA2-203ENST00000393578 EHMT2Q96KQ7 1210 aa35.69■■■■□ 3.3
HMGA2-203ENST00000393578 DNAJC5BQ9UF47 199 aa35.64■■■■□ 3.3
HMGA2-203ENST00000393578 FANCD2Q9BXW9 1451 aa35.6■■■■□ 3.29
HMGA2-203ENST00000393578 LAMC3Q9Y6N6 1575 aa35.6■■■■□ 3.29
HMGA2-203ENST00000393578 NESP48681 1621 aa35.59■■■■□ 3.29
HMGA2-203ENST00000393578 GOLGA3Q08378 1498 aa35.45■■■■□ 3.26
HMGA2-203ENST00000393578 KIF21BO75037 1637 aa35.44■■■■□ 3.26
HMGA2-203ENST00000393578 CEP164Q9UPV0 1460 aa35.43■■■■□ 3.26
HMGA2-203ENST00000393578 TNIKQ9UKE5 1360 aa35.41■■■■□ 3.26
HMGA2-203ENST00000393578 KIF27Q86VH2 1401 aa35.34■■■■□ 3.25
HMGA2-203ENST00000393578 DNMBPQ6XZF7 1577 aa35.33■■■■□ 3.25
HMGA2-203ENST00000393578 PDS5BQ9NTI5 1447 aa35.33■■■■□ 3.25
HMGA2-203ENST00000393578 FGD5Q6ZNL6 1462 aa35.31■■■■□ 3.24
HMGA2-203ENST00000393578 UBTFP17480 764 aaKnown RBP35.29■■■■□ 3.24
HMGA2-203ENST00000393578 TOPBP1Q92547 1522 aa35.25■■■■□ 3.23
HMGA2-203ENST00000393578 CEP162Q5TB80 1403 aa35.24■■■■□ 3.23
HMGA2-203ENST00000393578 KIF21AQ7Z4S6 1674 aa35.2■■■■□ 3.23
HMGA2-203ENST00000393578 RAPGEF2Q9Y4G8 1499 aa35.18■■■■□ 3.22
HMGA2-203ENST00000393578 PRXQ9BXM0 1461 aa35.18■■■■□ 3.22
HMGA2-203ENST00000393578 CUX2O14529 1486 aa35.16■■■■□ 3.22
HMGA2-203ENST00000393578 ERICH3Q5RHP9 1530 aa35.15■■■■□ 3.22
HMGA2-203ENST00000393578 URB2Q14146 1524 aaKnown RBP35.13■■■■□ 3.21
HMGA2-203ENST00000393578 POLA1P09884 1462 aaPredicted RBP35.11■■■■□ 3.21
HMGA2-203ENST00000393578 PCGF6Q9BYE7 350 aa35.03■■■■□ 3.2
HMGA2-203ENST00000393578 ABCA10Q8WWZ4 1543 aa35.02■■■■□ 3.2
HMGA2-203ENST00000393578 IGF1RP08069 1367 aa35■■■■□ 3.19
HMGA2-203ENST00000393578 RAD54L2Q9Y4B4 1467 aa34.99■■■■□ 3.19
HMGA2-203ENST00000393578 TRIM26Q12899 539 aaPredicted RBP34.96■■■■□ 3.19
HMGA2-203ENST00000393578 CLIP1P30622 1438 aa34.9■■■■□ 3.18
HMGA2-203ENST00000393578 WDR97A6NE52 1622 aa34.85■■■■□ 3.17
HMGA2-203ENST00000393578 MRC2Q9UBG0 1479 aa34.84■■■■□ 3.17
HMGA2-203ENST00000393578 CARMIL1Q5VZK9 1371 aa34.82■■■■□ 3.16
HMGA2-203ENST00000393578 TARBP1Q13395 1621 aaKnown RBP34.69■■■■□ 3.14
HMGA2-203ENST00000393578 ABCA5Q8WWZ7 1642 aa34.69■■■■□ 3.14
HMGA2-203ENST00000393578 CUL7Q14999 1698 aa34.67■■■■□ 3.14
HMGA2-203ENST00000393578 WDR62O43379 1518 aa34.67■■■■□ 3.14
HMGA2-203ENST00000393578 VPS8Q8N3P4 1428 aa34.64■■■■□ 3.14
HMGA2-203ENST00000393578 TDRD9Q8NDG6 1382 aaKnown RBP34.64■■■■□ 3.14
HMGA2-203ENST00000393578 ERCC6Q03468 1493 aa34.63■■■■□ 3.13
HMGA2-203ENST00000393578 GAPVD1Q14C86 1478 aa34.63■■■■□ 3.13
HMGA2-203ENST00000393578 RANGAP1P46060 587 aaPredicted RBP34.6■■■■□ 3.13
HMGA2-203ENST00000393578 PPARGC1BQ86YN6 1023 aaKnown RBP34.6■■■■□ 3.13
HMGA2-203ENST00000393578 THOC2Q8NI27 1593 aaKnown RBP34.55■■■■□ 3.12
HMGA2-203ENST00000393578 ARAP1Q96P48 1450 aa34.5■■■■□ 3.11
HMGA2-203ENST00000393578 IFT140Q96RY7 1462 aa34.48■■■■□ 3.11
HMGA2-203ENST00000393578 ARHGAP35Q9NRY4 1499 aa34.44■■■■□ 3.1
HMGA2-203ENST00000393578 PBRM1Q86U86 1689 aa34.39■■■■□ 3.1
HMGA2-203ENST00000393578 AQRO60306 1485 aaKnown RBP eCLIP34.36■■■■□ 3.093e-8■■□□□ 13.1
HMGA2-203ENST00000393578 CTTNBP2Q8WZ74 1663 aa34.32■■■■□ 3.08
HMGA2-203ENST00000393578 APLP2Q06481 763 aa34.32■■■■□ 3.08
HMGA2-203ENST00000393578 GRIN2BQ13224 1484 aa34.3■■■■□ 3.08
HMGA2-203ENST00000393578 HRCP23327 699 aa34.29■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms