Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
UBR4Q5T4S7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
UBR4Q5T4S7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
UBR4Q5T4S7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
UBR4Q5T4S7 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC16.28■□□□□ 0.2
UBR4Q5T4S7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
UBR4Q5T4S7 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 EBPL-203ENST00000378270 579 ntTSL 2 BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
UBR4Q5T4S7 MIR639-201ENST00000384974 98 ntBASIC16.25■□□□□ 0.19
UBR4Q5T4S7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
UBR4Q5T4S7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC16.24■□□□□ 0.19
UBR4Q5T4S7 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBR4Q5T4S7 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
UBR4Q5T4S7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC16.23■□□□□ 0.19
UBR4Q5T4S7 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
UBR4Q5T4S7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC16.22■□□□□ 0.19
UBR4Q5T4S7 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBR4Q5T4S7 ZNRF2P2-203ENST00000454624 420 ntBASIC16.2■□□□□ 0.18
UBR4Q5T4S7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC16.2■□□□□ 0.18
UBR4Q5T4S7 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBR4Q5T4S7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBR4Q5T4S7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBR4Q5T4S7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC16.19■□□□□ 0.18
UBR4Q5T4S7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
UBR4Q5T4S7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
UBR4Q5T4S7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
UBR4Q5T4S7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC16.18■□□□□ 0.18
UBR4Q5T4S7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC16.17■□□□□ 0.18
UBR4Q5T4S7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
UBR4Q5T4S7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC16.17■□□□□ 0.18
UBR4Q5T4S7 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC16.16■□□□□ 0.18
UBR4Q5T4S7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
UBR4Q5T4S7 DUX4L28-201ENST00000623687 678 ntBASIC16.15■□□□□ 0.18
UBR4Q5T4S7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBR4Q5T4S7 MIR935-201ENST00000401179 91 ntBASIC16.15■□□□□ 0.18
UBR4Q5T4S7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC16.12■□□□□ 0.17
UBR4Q5T4S7 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
UBR4Q5T4S7 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
UBR4Q5T4S7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC16.09■□□□□ 0.17
UBR4Q5T4S7 AC044849.2-201ENST00000606596 710 ntBASIC16.09■□□□□ 0.17
UBR4Q5T4S7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
UBR4Q5T4S7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC16.06■□□□□ 0.16
UBR4Q5T4S7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC16.05■□□□□ 0.16
UBR4Q5T4S7 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBR4Q5T4S7 ABHD17AP3-201ENST00000503096 1137 ntBASIC16.04■□□□□ 0.16
UBR4Q5T4S7 AL592295.1-201ENST00000400984 884 ntBASIC16.03■□□□□ 0.16
UBR4Q5T4S7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC16.03■□□□□ 0.16
UBR4Q5T4S7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC16.03■□□□□ 0.16
UBR4Q5T4S7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBR4Q5T4S7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC16.02■□□□□ 0.15
UBR4Q5T4S7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
UBR4Q5T4S7 MIR762-201ENST00000390236 83 ntBASIC16■□□□□ 0.15
UBR4Q5T4S7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC16■□□□□ 0.15
UBR4Q5T4S7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC16■□□□□ 0.15
UBR4Q5T4S7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
UBR4Q5T4S7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
UBR4Q5T4S7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
UBR4Q5T4S7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
UBR4Q5T4S7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
UBR4Q5T4S7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC15.98■□□□□ 0.15
UBR4Q5T4S7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
UBR4Q5T4S7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
UBR4Q5T4S7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC15.92■□□□□ 0.14
UBR4Q5T4S7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC15.92■□□□□ 0.14
UBR4Q5T4S7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBR4Q5T4S7 MIR3648-2-201ENST00000581792 180 ntBASIC15.91■□□□□ 0.14
UBR4Q5T4S7 MIR3648-1-201ENST00000615959 180 ntBASIC15.91■□□□□ 0.14
UBR4Q5T4S7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC15.9■□□□□ 0.14
UBR4Q5T4S7 AC005559.1-201ENST00000589661 871 ntBASIC15.9■□□□□ 0.14
UBR4Q5T4S7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
UBR4Q5T4S7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
UBR4Q5T4S7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
UBR4Q5T4S7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
UBR4Q5T4S7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBR4Q5T4S7 RARRES2P2-201ENST00000394842 485 ntBASIC15.88■□□□□ 0.13
UBR4Q5T4S7 AC016575.1-201ENST00000607026 382 ntBASIC15.88■□□□□ 0.13
UBR4Q5T4S7 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBR4Q5T4S7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBR4Q5T4S7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBR4Q5T4S7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBR4Q5T4S7 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC15.87■□□□□ 0.13
UBR4Q5T4S7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC15.87■□□□□ 0.13
UBR4Q5T4S7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 CHML-205ENST00000638160 705 ntTSL 3 BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC15.86■□□□□ 0.13
UBR4Q5T4S7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
UBR4Q5T4S7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC15.85■□□□□ 0.13
UBR4Q5T4S7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
UBR4Q5T4S7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
UBR4Q5T4S7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms