Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC40.05■■■■■ 4
MSH6P52701 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
MSH6P52701 MIR3665-201ENST00000578708 105 ntBASIC40.03■■■■■ 4
MSH6P52701 HLA-V-202ENST00000446817 847 ntBASIC40.01■■■■■ 4
MSH6P52701 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC40■■■■□ 3.99
MSH6P52701 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
MSH6P52701 AL133380.1-201ENST00000506013 324 ntBASIC39.99■■■■□ 3.99
MSH6P52701 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC39.99■■■■□ 3.99
MSH6P52701 MBP-237ENST00000579129 1052 ntTSL 5 BASIC39.99■■■■□ 3.99
MSH6P52701 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
MSH6P52701 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC39.98■■■■□ 3.99
MSH6P52701 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC39.98■■■■□ 3.99
MSH6P52701 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC39.97■■■■□ 3.99
MSH6P52701 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC39.94■■■■□ 3.98
MSH6P52701 AC087741.3-201ENST00000624270 1347 ntBASIC39.9■■■■□ 3.98
MSH6P52701 AC145285.7-201ENST00000614819 1539 ntBASIC39.9■■■■□ 3.98
MSH6P52701 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC39.9■■■■□ 3.98
MSH6P52701 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
MSH6P52701 EBPL-202ENST00000378268 680 ntTSL 3 BASIC39.88■■■■□ 3.97
MSH6P52701 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC39.87■■■■□ 3.97
MSH6P52701 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC39.85■■■■□ 3.97
MSH6P52701 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC39.84■■■■□ 3.97
MSH6P52701 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC39.82■■■■□ 3.96
MSH6P52701 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC39.81■■■■□ 3.96
MSH6P52701 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC39.81■■■■□ 3.96
MSH6P52701 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC39.81■■■■□ 3.96
MSH6P52701 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC39.81■■■■□ 3.96
MSH6P52701 DUX4L28-201ENST00000623687 678 ntBASIC39.81■■■■□ 3.96
MSH6P52701 ILK-212ENST00000532063 1617 ntTSL 2 BASIC39.78■■■■□ 3.96
MSH6P52701 AC044849.2-201ENST00000606596 710 ntBASIC39.76■■■■□ 3.96
MSH6P52701 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC39.73■■■■□ 3.95
MSH6P52701 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC39.69■■■■□ 3.94
MSH6P52701 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC39.67■■■■□ 3.94
MSH6P52701 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
MSH6P52701 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC39.65■■■■□ 3.94
MSH6P52701 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC39.65■■■■□ 3.94
MSH6P52701 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC39.63■■■■□ 3.93
MSH6P52701 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC39.63■■■■□ 3.93
MSH6P52701 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
MSH6P52701 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC39.6■■■■□ 3.93
MSH6P52701 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC39.59■■■■□ 3.93
MSH6P52701 CHML-205ENST00000638160 705 ntTSL 3 BASIC39.59■■■■□ 3.93
MSH6P52701 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC39.58■■■■□ 3.93
MSH6P52701 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC39.57■■■■□ 3.92
MSH6P52701 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
MSH6P52701 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC39.53■■■■□ 3.92
MSH6P52701 MIR762-201ENST00000390236 83 ntBASIC39.53■■■■□ 3.92
MSH6P52701 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC39.53■■■■□ 3.92
MSH6P52701 AC005559.1-201ENST00000589661 871 ntBASIC39.51■■■■□ 3.92
MSH6P52701 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC39.49■■■■□ 3.91
MSH6P52701 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC39.48■■■■□ 3.91
MSH6P52701 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC39.48■■■■□ 3.91
MSH6P52701 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC39.48■■■■□ 3.91
MSH6P52701 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
MSH6P52701 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC39.46■■■■□ 3.91
MSH6P52701 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
MSH6P52701 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
MSH6P52701 ZNRF2P2-203ENST00000454624 420 ntBASIC39.45■■■■□ 3.91
MSH6P52701 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
MSH6P52701 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC39.43■■■■□ 3.9
MSH6P52701 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
MSH6P52701 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC39.41■■■■□ 3.9
MSH6P52701 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC39.39■■■■□ 3.9
MSH6P52701 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC39.39■■■■□ 3.9
MSH6P52701 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC39.37■■■■□ 3.89
MSH6P52701 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC39.35■■■■□ 3.89
MSH6P52701 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
MSH6P52701 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
MSH6P52701 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC39.32■■■■□ 3.88
MSH6P52701 BOD1-206ENST00000480951 814 ntTSL 2 BASIC39.32■■■■□ 3.88
MSH6P52701 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC39.31■■■■□ 3.88
MSH6P52701 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC39.3■■■■□ 3.88
MSH6P52701 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
MSH6P52701 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC39.28■■■■□ 3.88
MSH6P52701 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC39.25■■■■□ 3.87
MSH6P52701 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC39.24■■■■□ 3.87
MSH6P52701 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
MSH6P52701 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
MSH6P52701 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC39.23■■■■□ 3.87
MSH6P52701 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
MSH6P52701 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC39.21■■■■□ 3.87
MSH6P52701 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC39.2■■■■□ 3.87
MSH6P52701 HGH1-207ENST00000628266 258 ntTSL 5 BASIC39.19■■■■□ 3.86
MSH6P52701 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
MSH6P52701 RPS2-202ENST00000526522 924 ntTSL 2 BASIC39.18■■■■□ 3.86
MSH6P52701 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC39.17■■■■□ 3.86
MSH6P52701 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC39.14■■■■□ 3.86
MSH6P52701 MIR4449-201ENST00000578365 66 ntBASIC39.14■■■■□ 3.86
MSH6P52701 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC39.12■■■■□ 3.85
MSH6P52701 DENR-202ENST00000455982 1052 ntTSL 5 BASIC39.11■■■■□ 3.85
MSH6P52701 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
MSH6P52701 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC39.04■■■■□ 3.84
MSH6P52701 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC39.04■■■■□ 3.84
MSH6P52701 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC39.03■■■■□ 3.84
MSH6P52701 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
MSH6P52701 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
MSH6P52701 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC38.97■■■■□ 3.83
MSH6P52701 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC38.96■■■■□ 3.83
MSH6P52701 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
MSH6P52701 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC38.95■■■■□ 3.83
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms