Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 AC010525.1-201ENST00000585559 441 ntBASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
KRT28Q7Z3Y7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 AL161729.1-201ENST00000604104 1402 ntBASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
KRT28Q7Z3Y7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.91■■■□□ 2.54
KRT28Q7Z3Y7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
KRT28Q7Z3Y7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC30.89■■■□□ 2.54
KRT28Q7Z3Y7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
KRT28Q7Z3Y7 ALDH1A3-203ENST00000557963 1670 ntBASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 NT5C3AP1-201ENST00000394500 1012 ntBASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 AC080038.1-201ENST00000611274 1154 ntBASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC30.87■■■□□ 2.53
KRT28Q7Z3Y7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC30.86■■■□□ 2.53
KRT28Q7Z3Y7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC30.86■■■□□ 2.53
KRT28Q7Z3Y7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC30.86■■■□□ 2.53
KRT28Q7Z3Y7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.86■■■□□ 2.53
KRT28Q7Z3Y7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
KRT28Q7Z3Y7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 AC091060.1-201ENST00000623524 1766 ntBASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 AL499627.2-201ENST00000606283 725 ntBASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.85■■■□□ 2.53
KRT28Q7Z3Y7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 KRT18P61-201ENST00000585825 1298 ntBASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC30.84■■■□□ 2.53
KRT28Q7Z3Y7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 RAP2CP1-201ENST00000605103 478 ntBASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
KRT28Q7Z3Y7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 HLA-L-211ENST00000482052 1765 ntBASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 AC006015.1-201ENST00000429970 570 ntBASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC30.82■■■□□ 2.52
KRT28Q7Z3Y7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
KRT28Q7Z3Y7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms