RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 NISCHQ9Y2I1 1504 aa52.36■■■■■ 5.97
NEDD8-201ENST00000250495 CCDC180Q9P1Z9 1646 aa46.88■■■■■ 5.1
NEDD8-201ENST00000250495 ABCC9O60706 1549 aa46.74■■■■■ 5.07
NEDD8-201ENST00000250495 RB1CC1Q8TDY2 1594 aa44.59■■■■■ 4.73
NEDD8-201ENST00000250495 NACADO15069 1562 aa44.34■■■■■ 4.69
NEDD8-201ENST00000250495 DCAF8L2P0C7V8 631 aa44.25■■■■■ 4.67
NEDD8-201ENST00000250495 MYO15BQ96JP2 1530 aa43.79■■■■■ 4.6
NEDD8-201ENST00000250495 DNAJC5BQ9UF47 199 aa43.72■■■■■ 4.59
NEDD8-201ENST00000250495 PABPN1Q86U42 306 aaKnown RBP eCLIP43.6■■■■■ 4.57
NEDD8-201ENST00000250495 UNC13AQ9UPW8 1703 aa43.5■■■■■ 4.55
NEDD8-201ENST00000250495 ZCCHC6Q5VYS8 1495 aaKnown RBP43.39■■■■■ 4.54
NEDD8-201ENST00000250495 DCAF1Q9Y4B6 1507 aa43.27■■■■■ 4.52
NEDD8-201ENST00000250495 BICRAQ9NZM4 1560 aa43.22■■■■■ 4.51
NEDD8-201ENST00000250495 SHROOM4Q9ULL8 1493 aa42.73■■■■■ 4.43
NEDD8-201ENST00000250495 SCRIBQ14160 1630 aa42.71■■■■■ 4.43
NEDD8-201ENST00000250495 CC2D2AQ9P2K1 1620 aa42.22■■■■■ 4.35
NEDD8-201ENST00000250495 EIF4G1Q04637 1599 aaKnown RBP42.18■■■■■ 4.34
NEDD8-201ENST00000250495 CECR2Q9BXF3 1484 aa42.11■■■■■ 4.33
NEDD8-201ENST00000250495 NCAPD3P42695 1498 aa40.95■■■■■ 4.15
NEDD8-201ENST00000250495 ATAD2BQ9ULI0 1458 aa40.82■■■■■ 4.12
NEDD8-201ENST00000250495 SMARCA4P51532 1647 aa40.78■■■■■ 4.12
NEDD8-201ENST00000250495 SMARCA2P51531 1590 aa40.72■■■■■ 4.11
NEDD8-201ENST00000250495 BAZ1AQ9NRL2 1556 aaPredicted RBP40.65■■■■■ 4.1
NEDD8-201ENST00000250495 HMGXB3Q12766 1538 aa40.61■■■■■ 4.09
NEDD8-201ENST00000250495 BAZ1BQ9UIG0 1483 aaKnown RBP40.43■■■■■ 4.06
NEDD8-201ENST00000250495 PEG3Q9GZU2 1588 aa40.4■■■■■ 4.06
NEDD8-201ENST00000250495 ERCC6Q03468 1493 aa40.39■■■■■ 4.06
NEDD8-201ENST00000250495 MROH2BQ7Z745 1585 aa40.32■■■■■ 4.05
NEDD8-201ENST00000250495 CUX2O14529 1486 aa40.25■■■■■ 4.03
NEDD8-201ENST00000250495 NESP48681 1621 aa40.18■■■■■ 4.02
NEDD8-201ENST00000250495 DNAJC5Q9H3Z4 198 aa40.1■■■■■ 4.01
NEDD8-201ENST00000250495 LAMC3Q9Y6N6 1575 aa39.97■■■■□ 3.99
NEDD8-201ENST00000250495 WIZO95785 1651 aa39.84■■■■□ 3.97
NEDD8-201ENST00000250495 PDS5BQ9NTI5 1447 aa39.79■■■■□ 3.96
NEDD8-201ENST00000250495 CADPSQ9ULU8 1353 aa39.72■■■■□ 3.95
NEDD8-201ENST00000250495 THOC2Q8NI27 1593 aaKnown RBP39.71■■■■□ 3.95
NEDD8-201ENST00000250495 KIF21AQ7Z4S6 1674 aa39.64■■■■□ 3.94
NEDD8-201ENST00000250495 RSF1Q96T23 1441 aaPredicted RBP39.58■■■■□ 3.93
NEDD8-201ENST00000250495 MRC2Q9UBG0 1479 aa39.37■■■■□ 3.89
NEDD8-201ENST00000250495 TOP2AP11388 1531 aaKnown RBP39.36■■■■□ 3.89
NEDD8-201ENST00000250495 CFTRP13569 1480 aa39.28■■■■□ 3.88
NEDD8-201ENST00000250495 CEP164Q9UPV0 1460 aa39.25■■■■□ 3.87
NEDD8-201ENST00000250495 WDR62O43379 1518 aa39.24■■■■□ 3.87
NEDD8-201ENST00000250495 FANCD2Q9BXW9 1451 aa39.23■■■■□ 3.87
NEDD8-201ENST00000250495 CCDC88BA6NC98 1476 aa38.95■■■■□ 3.83
NEDD8-201ENST00000250495 URB2Q14146 1524 aaKnown RBP38.86■■■■□ 3.81
NEDD8-201ENST00000250495 PRDM2Q13029 1718 aa38.83■■■■□ 3.81
NEDD8-201ENST00000250495 OSCARQ8IYS5 282 aa38.54■■■■□ 3.76
NEDD8-201ENST00000250495 ABCC8Q09428 1581 aa38.51■■■■□ 3.76
NEDD8-201ENST00000250495 TOPBP1Q92547 1522 aa38.49■■■■□ 3.75
NEDD8-201ENST00000250495 IFT140Q96RY7 1462 aa38.48■■■■□ 3.75
NEDD8-201ENST00000250495 TRIM41Q8WV44 630 aa38.39■■■■□ 3.74
NEDD8-201ENST00000250495 DNMBPQ6XZF7 1577 aa38.36■■■■□ 3.73
NEDD8-201ENST00000250495 ZNF608Q9ULD9 1512 aaPredicted RBP38.36■■■■□ 3.73
NEDD8-201ENST00000250495 EIF4G3O43432 1585 aaKnown RBP38.13■■■■□ 3.69
NEDD8-201ENST00000250495 POLA1P09884 1462 aaPredicted RBP38.11■■■■□ 3.69
NEDD8-201ENST00000250495 TARBP1Q13395 1621 aaKnown RBP38.11■■■■□ 3.69
NEDD8-201ENST00000250495 AQRO60306 1485 aaKnown RBP eCLIP38.08■■■■□ 3.698e-8■■□□□ 11.9
NEDD8-201ENST00000250495 SUPT5HO00267 1087 aaKnown RBP38.03■■■■□ 3.68
NEDD8-201ENST00000250495 SOGA1O94964 1423 aa38■■■■□ 3.67
NEDD8-201ENST00000250495 RAD54L2Q9Y4B4 1467 aa37.97■■■■□ 3.67
NEDD8-201ENST00000250495 FGD5Q6ZNL6 1462 aa37.9■■■■□ 3.66
NEDD8-201ENST00000250495 TDRD9Q8NDG6 1382 aaKnown RBP37.89■■■■□ 3.66
NEDD8-201ENST00000250495 RIMBP3CA6NJZ7 1639 aa37.87■■■■□ 3.65
NEDD8-201ENST00000250495 RIMBP3BA6NNM3 1639 aa37.87■■■■□ 3.65
NEDD8-201ENST00000250495 RIMBP3Q9UFD9 1639 aa37.87■■■■□ 3.65
NEDD8-201ENST00000250495 CUX1P39880 1505 aa37.87■■■■□ 3.65
NEDD8-201ENST00000250495 FBLN2P98095 1184 aa37.86■■■■□ 3.65
NEDD8-201ENST00000250495 CHD1O14646 1710 aa37.81■■■■□ 3.64
NEDD8-201ENST00000250495 ARHGEF11O15085 1522 aa37.79■■■■□ 3.64
NEDD8-201ENST00000250495 WDR97A6NE52 1622 aa37.79■■■■□ 3.64
NEDD8-201ENST00000250495 SNAPC4Q5SXM2 1469 aa37.66■■■■□ 3.62
NEDD8-201ENST00000250495 CHMP7Q8WUX9 453 aaPredicted RBP37.63■■■■□ 3.61
NEDD8-201ENST00000250495 GRIN2BQ13224 1484 aa37.63■■■■□ 3.61
NEDD8-201ENST00000250495 MAGI1Q96QZ7 1491 aaPredicted RBP37.6■■■■□ 3.61
NEDD8-201ENST00000250495 CYB5RLQ6IPT4 315 aa37.6■■■■□ 3.61
NEDD8-201ENST00000250495 GAPVD1Q14C86 1478 aa37.52■■■■□ 3.6
NEDD8-201ENST00000250495 ABCA10Q8WWZ4 1543 aa37.49■■■■□ 3.59
NEDD8-201ENST00000250495 SYNJ2O15056 1496 aa37.47■■■■□ 3.59
NEDD8-201ENST00000250495 SYNJ1O43426 1573 aa37.44■■■■□ 3.58
NEDD8-201ENST00000250495 WRNQ14191 1432 aaPredicted RBP eCLIP37.42■■■■□ 3.58
NEDD8-201ENST00000250495 PBRM1Q86U86 1689 aa37.41■■■■□ 3.58
NEDD8-201ENST00000250495 ARAP1Q96P48 1450 aa37.41■■■■□ 3.58
NEDD8-201ENST00000250495 CLASP1Q7Z460 1538 aa37.4■■■■□ 3.58
NEDD8-201ENST00000250495 ABCA5Q8WWZ7 1642 aa37.36■■■■□ 3.57
NEDD8-201ENST00000250495 TOP2BQ02880 1626 aa37.32■■■■□ 3.57
NEDD8-201ENST00000250495 BIVM-ERCC5R4GMW8 1640 aa37.3■■■■□ 3.56
NEDD8-201ENST00000250495 TRHP20396 242 aaPredicted RBP37.15■■■■□ 3.54
NEDD8-201ENST00000250495 GRIN2AQ12879 1464 aa37.12■■■■□ 3.53
NEDD8-201ENST00000250495 ADAMTS12P58397 1594 aa37.07■■■■□ 3.52
NEDD8-201ENST00000250495 FHAD1B1AJZ9 1412 aa37.06■■■■□ 3.52
NEDD8-201ENST00000250495 ERICH3Q5RHP9 1530 aa37.03■■■■□ 3.52
NEDD8-201ENST00000250495 NUP160Q12769 1436 aa36.99■■■■□ 3.51
NEDD8-201ENST00000250495 CEP170Q5SW79 1584 aa36.93■■■■□ 3.5
NEDD8-201ENST00000250495 ERCC6L2Q5T890 1561 aa36.81■■■■□ 3.48
NEDD8-201ENST00000250495 SHROOM2Q13796 1616 aa36.77■■■■□ 3.48
NEDD8-201ENST00000250495 JPH4Q96JJ6 628 aa36.71■■■■□ 3.47
NEDD8-201ENST00000250495 KIF27Q86VH2 1401 aa36.67■■■■□ 3.46
NEDD8-201ENST00000250495 PRG4Q92954 1404 aaPredicted RBP36.65■■■■□ 3.46
NEDD8-201ENST00000250495 IGF1RP08069 1367 aa36.64■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms