Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGB3O15347 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB3O15347 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
HMGB3O15347 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB3O15347 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
HMGB3O15347 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGB3O15347 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGB3O15347 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB3O15347 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HMGB3O15347 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGB3O15347 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB3O15347 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HMGB3O15347 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB3O15347 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
HMGB3O15347 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
HMGB3O15347 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB3O15347 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
HMGB3O15347 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
HMGB3O15347 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB3O15347 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB3O15347 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HMGB3O15347 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB3O15347 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB3O15347 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB3O15347 AC126177.7-201ENST00000547904 679 ntBASIC18.05■□□□□ 0.48
HMGB3O15347 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HMGB3O15347 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HMGB3O15347 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HMGB3O15347 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB3O15347 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 ANOS2P-203ENST00000472227 1816 ntBASIC18.05■□□□□ 0.48
HMGB3O15347 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB3O15347 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB3O15347 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB3O15347 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB3O15347 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB3O15347 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB3O15347 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB3O15347 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB3O15347 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB3O15347 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB3O15347 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB3O15347 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGB3O15347 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HMGB3O15347 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB3O15347 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB3O15347 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGB3O15347 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB3O15347 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
HMGB3O15347 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.03■□□□□ 0.48
HMGB3O15347 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB3O15347 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.03■□□□□ 0.48
HMGB3O15347 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HMGB3O15347 AC007375.3-201ENST00000600936 2314 ntBASIC18.03■□□□□ 0.48
HMGB3O15347 GUSBP5-202ENST00000510805 1989 ntBASIC18.02■□□□□ 0.48
HMGB3O15347 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HMGB3O15347 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB3O15347 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB3O15347 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB3O15347 LINC00526-201ENST00000581067 1875 ntBASIC18.02■□□□□ 0.48
HMGB3O15347 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB3O15347 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB3O15347 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms