RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 NISCHQ9Y2I1 1504 aa49.89■■■■■ 5.58
PDLIM2-203ENST00000339162 CCDC180Q9P1Z9 1646 aa43.14■■■■■ 4.5
PDLIM2-203ENST00000339162 ZCCHC6Q5VYS8 1495 aaKnown RBP41.94■■■■■ 4.31
PDLIM2-203ENST00000339162 DCAF8L2P0C7V8 631 aa41.55■■■■■ 4.24
PDLIM2-203ENST00000339162 SHROOM4Q9ULL8 1493 aa41.36■■■■■ 4.21
PDLIM2-203ENST00000339162 DCAF1Q9Y4B6 1507 aa41.04■■■■■ 4.16
PDLIM2-203ENST00000339162 ABCC9O60706 1549 aa40.91■■■■■ 4.14
PDLIM2-203ENST00000339162 MYO15BQ96JP2 1530 aa40.38■■■■■ 4.05
PDLIM2-203ENST00000339162 NACADO15069 1562 aa40.17■■■■■ 4.02
PDLIM2-203ENST00000339162 SCRIBQ14160 1630 aa40.05■■■■■ 4
PDLIM2-203ENST00000339162 SUPT5HO00267 1087 aaKnown RBP39.95■■■■□ 3.99
PDLIM2-203ENST00000339162 RB1CC1Q8TDY2 1594 aa39.79■■■■□ 3.96
PDLIM2-203ENST00000339162 UNC13AQ9UPW8 1703 aa39.08■■■■□ 3.85
PDLIM2-203ENST00000339162 RSF1Q96T23 1441 aaPredicted RBP38.93■■■■□ 3.82
PDLIM2-203ENST00000339162 CECR2Q9BXF3 1484 aa38.92■■■■□ 3.82
PDLIM2-203ENST00000339162 PABPN1Q86U42 306 aaKnown RBP eCLIP38.79■■■■□ 3.8
PDLIM2-203ENST00000339162 BICRAQ9NZM4 1560 aa38.69■■■■□ 3.78
PDLIM2-203ENST00000339162 MROH2BQ7Z745 1585 aa38.67■■■■□ 3.78
PDLIM2-203ENST00000339162 BAZ1AQ9NRL2 1556 aaPredicted RBP38.45■■■■□ 3.75
PDLIM2-203ENST00000339162 WIZO95785 1651 aa38.38■■■■□ 3.73
PDLIM2-203ENST00000339162 SMARCA4P51532 1647 aa38.27■■■■□ 3.72
PDLIM2-203ENST00000339162 CHIC1Q5VXU3 224 aa38.26■■■■□ 3.71
PDLIM2-203ENST00000339162 TOP2AP11388 1531 aaKnown RBP37.83■■■■□ 3.65
PDLIM2-203ENST00000339162 PEG3Q9GZU2 1588 aa37.66■■■■□ 3.62
PDLIM2-203ENST00000339162 ATAD2BQ9ULI0 1458 aa37.61■■■■□ 3.61
PDLIM2-203ENST00000339162 CCDC88BA6NC98 1476 aa37.59■■■■□ 3.61
PDLIM2-203ENST00000339162 SMARCA2P51531 1590 aa37.56■■■■□ 3.6
PDLIM2-203ENST00000339162 EIF4G1Q04637 1599 aaKnown RBP37.5■■■■□ 3.59
PDLIM2-203ENST00000339162 BAZ1BQ9UIG0 1483 aaKnown RBP37.42■■■■□ 3.58
PDLIM2-203ENST00000339162 TRIM41Q8WV44 630 aa37.38■■■■□ 3.58
PDLIM2-203ENST00000339162 NCAPD3P42695 1498 aa37.15■■■■□ 3.54
PDLIM2-203ENST00000339162 HMGXB3Q12766 1538 aa37.05■■■■□ 3.52
PDLIM2-203ENST00000339162 ABCC8Q09428 1581 aa37.01■■■■□ 3.52
PDLIM2-203ENST00000339162 LOC105371045A0A1W2PR82 267 aa37■■■■□ 3.51
PDLIM2-203ENST00000339162 FAM9AQ8IZU1 332 aaPredicted RBP36.93■■■■□ 3.5
PDLIM2-203ENST00000339162 CC2D2AQ9P2K1 1620 aa36.9■■■■□ 3.5
PDLIM2-203ENST00000339162 WRNQ14191 1432 aaPredicted RBP eCLIP36.61■■■■□ 3.45
PDLIM2-203ENST00000339162 EHMT2Q96KQ7 1210 aa36.58■■■■□ 3.45
PDLIM2-203ENST00000339162 SYNJ1O43426 1573 aa36.47■■■■□ 3.43
PDLIM2-203ENST00000339162 CFTRP13569 1480 aa36.46■■■■□ 3.43
PDLIM2-203ENST00000339162 SOGA1O94964 1423 aa36.4■■■■□ 3.42
PDLIM2-203ENST00000339162 CADPSQ9ULU8 1353 aa36.31■■■■□ 3.4
PDLIM2-203ENST00000339162 RUSC2Q8N2Y8 1516 aa36.28■■■■□ 3.4
PDLIM2-203ENST00000339162 DNAJC5BQ9UF47 199 aa36.22■■■■□ 3.39
PDLIM2-203ENST00000339162 TOP2BQ02880 1626 aa36.18■■■■□ 3.38
PDLIM2-203ENST00000339162 PRDM2Q13029 1718 aa36.12■■■■□ 3.37
PDLIM2-203ENST00000339162 CUX1P39880 1505 aa36.1■■■■□ 3.37
PDLIM2-203ENST00000339162 CSRNP3Q8WYN3 585 aa36.1■■■■□ 3.37
PDLIM2-203ENST00000339162 BIVM-ERCC5R4GMW8 1640 aa36.09■■■■□ 3.37
PDLIM2-203ENST00000339162 EEA1Q15075 1411 aa36.08■■■■□ 3.37
PDLIM2-203ENST00000339162 NESP48681 1621 aa36.05■■■■□ 3.36
PDLIM2-203ENST00000339162 FANCD2Q9BXW9 1451 aa35.93■■■■□ 3.34
PDLIM2-203ENST00000339162 UBTFP17480 764 aaKnown RBP35.79■■■■□ 3.32
PDLIM2-203ENST00000339162 LAMC3Q9Y6N6 1575 aa35.78■■■■□ 3.32
PDLIM2-203ENST00000339162 GOLGA3Q08378 1498 aa35.73■■■■□ 3.31
PDLIM2-203ENST00000339162 TNIKQ9UKE5 1360 aa35.69■■■■□ 3.3
PDLIM2-203ENST00000339162 CEP164Q9UPV0 1460 aa35.69■■■■□ 3.3
PDLIM2-203ENST00000339162 FGD5Q6ZNL6 1462 aa35.67■■■■□ 3.3
PDLIM2-203ENST00000339162 KIF21BO75037 1637 aa35.65■■■■□ 3.3
PDLIM2-203ENST00000339162 PCGF6Q9BYE7 350 aa35.63■■■■□ 3.29
PDLIM2-203ENST00000339162 KIF27Q86VH2 1401 aa35.62■■■■□ 3.29
PDLIM2-203ENST00000339162 CEP162Q5TB80 1403 aa35.61■■■■□ 3.29
PDLIM2-203ENST00000339162 RAPGEF2Q9Y4G8 1499 aa35.59■■■■□ 3.29
PDLIM2-203ENST00000339162 PDS5BQ9NTI5 1447 aa35.58■■■■□ 3.29
PDLIM2-203ENST00000339162 DNMBPQ6XZF7 1577 aa35.57■■■■□ 3.28
PDLIM2-203ENST00000339162 TOPBP1Q92547 1522 aa35.56■■■■□ 3.28
PDLIM2-203ENST00000339162 CUX2O14529 1486 aa35.54■■■■□ 3.28
PDLIM2-203ENST00000339162 URB2Q14146 1524 aaKnown RBP35.48■■■■□ 3.27
PDLIM2-203ENST00000339162 KIF21AQ7Z4S6 1674 aa35.46■■■■□ 3.27
PDLIM2-203ENST00000339162 PRXQ9BXM0 1461 aa35.45■■■■□ 3.27
PDLIM2-203ENST00000339162 POLA1P09884 1462 aaPredicted RBP35.44■■■■□ 3.26
PDLIM2-203ENST00000339162 RAD54L2Q9Y4B4 1467 aa35.44■■■■□ 3.26
PDLIM2-203ENST00000339162 PPARGC1BQ86YN6 1023 aaKnown RBP35.37■■■■□ 3.25
PDLIM2-203ENST00000339162 RANGAP1P46060 587 aaPredicted RBP35.34■■■■□ 3.25
PDLIM2-203ENST00000339162 IGF1RP08069 1367 aa35.34■■■■□ 3.25
PDLIM2-203ENST00000339162 TRIM26Q12899 539 aaPredicted RBP35.34■■■■□ 3.25
PDLIM2-203ENST00000339162 ERICH3Q5RHP9 1530 aa35.33■■■■□ 3.25
PDLIM2-203ENST00000339162 ABCA10Q8WWZ4 1543 aa35.26■■■■□ 3.23
PDLIM2-203ENST00000339162 CLIP1P30622 1438 aa35.25■■■■□ 3.23
PDLIM2-203ENST00000339162 CARMIL1Q5VZK9 1371 aa35.17■■■■□ 3.22
PDLIM2-203ENST00000339162 TDRD9Q8NDG6 1382 aaKnown RBP35.1■■■■□ 3.21
PDLIM2-203ENST00000339162 MRC2Q9UBG0 1479 aa35.1■■■■□ 3.21
PDLIM2-203ENST00000339162 WDR97A6NE52 1622 aa35.06■■■■□ 3.2
PDLIM2-203ENST00000339162 TTBK1Q5TCY1 1321 aaPredicted RBP35.05■■■■□ 3.2
PDLIM2-203ENST00000339162 ERCC6Q03468 1493 aa34.97■■■■□ 3.19
PDLIM2-203ENST00000339162 TARBP1Q13395 1621 aaKnown RBP34.95■■■■□ 3.19
PDLIM2-203ENST00000339162 VPS8Q8N3P4 1428 aa34.94■■■■□ 3.18
PDLIM2-203ENST00000339162 GAPVD1Q14C86 1478 aa34.94■■■■□ 3.18
PDLIM2-203ENST00000339162 ABCA5Q8WWZ7 1642 aa34.93■■■■□ 3.18
PDLIM2-203ENST00000339162 WDR62O43379 1518 aa34.86■■■■□ 3.17
PDLIM2-203ENST00000339162 ARAP1Q96P48 1450 aa34.85■■■■□ 3.17
PDLIM2-203ENST00000339162 CUL7Q14999 1698 aa34.84■■■■□ 3.17
PDLIM2-203ENST00000339162 AQRO60306 1485 aaKnown RBP eCLIP34.8■■■■□ 3.16
PDLIM2-203ENST00000339162 ARHGAP35Q9NRY4 1499 aa34.79■■■■□ 3.16
PDLIM2-203ENST00000339162 HRCP23327 699 aa34.71■■■■□ 3.15
PDLIM2-203ENST00000339162 THOC2Q8NI27 1593 aaKnown RBP34.71■■■■□ 3.15
PDLIM2-203ENST00000339162 IFT140Q96RY7 1462 aa34.7■■■■□ 3.15
PDLIM2-203ENST00000339162 ZNF608Q9ULD9 1512 aaPredicted RBP34.7■■■■□ 3.15
PDLIM2-203ENST00000339162 APLP2Q06481 763 aa34.7■■■■□ 3.14
PDLIM2-203ENST00000339162 PBRM1Q86U86 1689 aa34.63■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms