Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NKX6-3A6NJ46 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NKX6-3A6NJ46 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.94■□□□□ 0.62
NKX6-3A6NJ46 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NKX6-3A6NJ46 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.93■□□□□ 0.62
NKX6-3A6NJ46 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX6-3A6NJ46 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX6-3A6NJ46 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX6-3A6NJ46 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NKX6-3A6NJ46 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NKX6-3A6NJ46 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 AL356740.2-201ENST00000601559 647 ntBASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NKX6-3A6NJ46 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NKX6-3A6NJ46 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
NKX6-3A6NJ46 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
NKX6-3A6NJ46 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NKX6-3A6NJ46 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.88■□□□□ 0.61
NKX6-3A6NJ46 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms