Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SOCS2-204ENST00000548091 744 ntTSL 328.81■■■□□ 2.23e-6■□□□□ 8.4
YBX3P16989 COX17-202ENST00000468918 555 ntTSL 417.95■□□□□ 0.463e-6■□□□□ 8.4
YBX3P16989 COX17-201ENST00000261070 684 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.093e-6■□□□□ 8.4
YBX3P16989 COX17-203ENST00000484810 471 ntTSL 2 BASIC12.64□□□□□ -0.393e-6■□□□□ 8.4
YBX3P16989 COX17-206ENST00000497116 660 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.413e-6■□□□□ 8.4
YBX3P16989 COX17-204ENST00000486606 430 ntTSL 38.88□□□□□ -0.993e-6■□□□□ 8.4
YBX3P16989 FOXK2-211ENST00000575578 571 ntTSL 218.83■□□□□ 0.63e-6■□□□□ 8.4
YBX3P16989 ATP11B-205ENST00000482794 738 ntTSL 56.61□□□□□ -1.352e-6■□□□□ 8.4
YBX3P16989 ATP11B-210ENST00000498086 3259 ntTSL 53.71□□□□□ -1.812e-6■□□□□ 8.4
YBX3P16989 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.536e-8■□□□□ 8.4
YBX3P16989 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.196e-8■□□□□ 8.4
YBX3P16989 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.99■■□□□ 1.756e-8■□□□□ 8.4
YBX3P16989 ANXA5-211ENST00000515717 594 ntTSL 210.68□□□□□ -0.72e-9■□□□□ 8.4
YBX3P16989 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.354e-16■□□□□ 8.4
YBX3P16989 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.59e-9■□□□□ 8.4
YBX3P16989 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.479e-9■□□□□ 8.4
YBX3P16989 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.399e-9■□□□□ 8.4
YBX3P16989 GMDS-201ENST00000380805 1743 ntTSL 221.86■■□□□ 1.099e-9■□□□□ 8.4
YBX3P16989 GMDS-209ENST00000531690 515 ntTSL 56.99□□□□□ -1.299e-9■□□□□ 8.4
YBX3P16989 CUL4A-211ENST00000498562 790 ntTSL 335.4■■■■□ 3.263e-7■□□□□ 8.4
YBX3P16989 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.133e-7■□□□□ 8.4
YBX3P16989 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC15.31■□□□□ 0.043e-7■□□□□ 8.4
YBX3P16989 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC13.39□□□□□ -0.273e-7■□□□□ 8.4
YBX3P16989 CUL4A-201ENST00000326335 3705 ntTSL 1 (best) BASIC11.34□□□□□ -0.593e-7■□□□□ 8.4
YBX3P16989 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC10.32□□□□□ -0.763e-7■□□□□ 8.4
YBX3P16989 DAP3-221ENST00000491777 556 ntTSL 314.54□□□□□ -0.081e-11■□□□□ 8.4
YBX3P16989 DAP3-217ENST00000477394 816 ntTSL 511.72□□□□□ -0.531e-11■□□□□ 8.4
YBX3P16989 DAP3-220ENST00000490249 710 ntTSL 37.6□□□□□ -1.191e-11■□□□□ 8.4
YBX3P16989 DAP3-207ENST00000463295 607 ntTSL 56.66□□□□□ -1.341e-11■□□□□ 8.4
YBX3P16989 DAP3-216ENST00000476444 679 ntTSL 26.37□□□□□ -1.391e-11■□□□□ 8.4
YBX3P16989 DAP3-215ENST00000475056 682 ntTSL 35.53□□□□□ -1.521e-11■□□□□ 8.4
YBX3P16989 APOA2-202ENST00000463273 469 ntTSL 1 (best)11.97□□□□□ -0.491e-323■□□□□ 8.4
YBX3P16989 CELF1-213ENST00000530151 583 ntTSL 328.77■■■□□ 2.26e-8■□□□□ 8.4
YBX3P16989 CELF1-210ENST00000526419 476 ntTSL 424.91■■□□□ 1.586e-8■□□□□ 8.4
YBX3P16989 CELF1-208ENST00000525841 622 ntTSL 519.62■□□□□ 0.736e-8■□□□□ 8.4
YBX3P16989 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.79□□□□□ -0.046e-8■□□□□ 8.4
YBX3P16989 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.086e-8■□□□□ 8.4
YBX3P16989 CELF1-203ENST00000361904 1580 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.236e-8■□□□□ 8.4
YBX3P16989 CELF1-221ENST00000543178 576 ntTSL 412.13□□□□□ -0.476e-8■□□□□ 8.4
YBX3P16989 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC11.83□□□□□ -0.526e-8■□□□□ 8.4
YBX3P16989 CELF1-202ENST00000358597 2108 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.756e-8■□□□□ 8.4
YBX3P16989 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC9.74□□□□□ -0.856e-8■□□□□ 8.4
YBX3P16989 CELF1-215ENST00000532048 3044 ntTSL 1 (best) BASIC8.65□□□□□ -1.026e-8■□□□□ 8.4
YBX3P16989 CELF1-218ENST00000535982 549 ntTSL 48.21□□□□□ -1.16e-8■□□□□ 8.4
YBX3P16989 CELF1-211ENST00000528434 543 ntTSL 57.89□□□□□ -1.156e-8■□□□□ 8.4
YBX3P16989 DCXR-217ENST00000582613 617 ntTSL 234.96■■■■□ 3.196e-8■□□□□ 8.4
YBX3P16989 DCXR-220ENST00000585085 927 ntTSL 532.13■■■□□ 2.736e-8■□□□□ 8.4
YBX3P16989 YIF1A-213ENST00000534374 540 ntTSL 231.06■■■□□ 2.566e-8■□□□□ 8.4
YBX3P16989 CCDC28B-203ENST00000461819 780 ntTSL 529.13■■■□□ 2.256e-8■□□□□ 8.4
YBX3P16989 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.246e-8■□□□□ 8.4
YBX3P16989 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.126e-8■□□□□ 8.4
YBX3P16989 DCXR-207ENST00000578885 968 ntTSL 528.23■■■□□ 2.116e-8■□□□□ 8.4
YBX3P16989 DCXR-213ENST00000580320 915 ntTSL 228.09■■■□□ 2.096e-8■□□□□ 8.4
YBX3P16989 DCXR-206ENST00000578273 877 ntTSL 527.63■■■□□ 2.016e-8■□□□□ 8.4
YBX3P16989 DCXR-210ENST00000579334 1251 ntTSL 527.6■■■□□ 2.016e-8■□□□□ 8.4
YBX3P16989 DCXR-221ENST00000585164 475 ntTSL 527.47■■□□□ 1.996e-8■□□□□ 8.4
YBX3P16989 DCXR-214ENST00000580750 1076 ntTSL 526.73■■□□□ 1.876e-8■□□□□ 8.4
YBX3P16989 EIF4G1-233ENST00000475721 1271 ntTSL 226.57■■□□□ 1.846e-8■□□□□ 8.4
YBX3P16989 DCXR-212ENST00000579842 715 ntTSL 326.5■■□□□ 1.836e-8■□□□□ 8.4
YBX3P16989 DCXR-218ENST00000582900 676 ntTSL 326.5■■□□□ 1.836e-8■□□□□ 8.4
YBX3P16989 DCXR-215ENST00000581584 766 ntTSL 326.06■■□□□ 1.766e-8■□□□□ 8.4
YBX3P16989 DCXR-209ENST00000579155 430 ntTSL 524.6■■□□□ 1.536e-8■□□□□ 8.4
YBX3P16989 DCXR-204ENST00000577712 429 ntTSL 522.84■■□□□ 1.256e-8■□□□□ 8.4
YBX3P16989 EIF4G1-230ENST00000460829 1804 ntTSL 222.59■■□□□ 1.216e-8■□□□□ 8.4
YBX3P16989 EIF4G1-234ENST00000478291 564 ntTSL 221.17■□□□□ 0.986e-8■□□□□ 8.4
YBX3P16989 DCXR-219ENST00000584318 284 ntTSL 520.32■□□□□ 0.846e-8■□□□□ 8.4
YBX3P16989 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.31■□□□□ 0.846e-8■□□□□ 8.4
YBX3P16989 DCXR-211ENST00000579821 452 ntTSL 316.41■□□□□ 0.226e-8■□□□□ 8.4
YBX3P16989 EIF4G1-231ENST00000464548 637 ntTSL 516.36■□□□□ 0.216e-8■□□□□ 8.4
YBX3P16989 EIF4G1-211ENST00000422614 750 ntTSL 515.4■□□□□ 0.066e-8■□□□□ 8.4
YBX3P16989 DCXR-216ENST00000582074 631 ntTSL 314.35□□□□□ -0.116e-8■□□□□ 8.4
YBX3P16989 GNA13-202ENST00000541118 1502 ntTSL 2 BASIC13.04□□□□□ -0.326e-8■□□□□ 8.4
YBX3P16989 GPBP1L1-214ENST00000498128 559 ntTSL 312.95□□□□□ -0.348e-8■□□□□ 8.4
YBX3P16989 DCXR-203ENST00000577532 573 ntTSL 311.64□□□□□ -0.556e-8■□□□□ 8.4
YBX3P16989 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.751e-12■□□□□ 8.4
YBX3P16989 CDK6-204ENST00000473078 386 ntTSL 23.23□□□□□ -1.891e-12■□□□□ 8.4
YBX3P16989 CCT5-210ENST00000511995 1091 ntTSL 212.92□□□□□ -0.344e-9■□□□□ 8.4
YBX3P16989 VARS-218ENST00000459667 793 ntTSL 327■■□□□ 1.911e-21■□□□□ 8.4
YBX3P16989 VARS-224ENST00000479051 612 ntTSL 326.19■■□□□ 1.781e-21■□□□□ 8.4
YBX3P16989 VARS-216ENST00000428445 863 ntTSL 523.01■■□□□ 1.271e-21■□□□□ 8.4
YBX3P16989 VARS-225ENST00000482996 728 ntTSL 318.26■□□□□ 0.511e-21■□□□□ 8.4
YBX3P16989 MCM4-212ENST00000521151 1125 ntTSL 212.43□□□□□ -0.426e-8■□□□□ 8.4
YBX3P16989 OSBPL8-205ENST00000547540 2583 ntTSL 1 (best)18.15■□□□□ 0.54e-8■□□□□ 8.4
YBX3P16989 HDLBP-229ENST00000460826 442 ntTSL 217.74■□□□□ 0.434e-8■□□□□ 8.4
YBX3P16989 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.124e-8■□□□□ 8.4
YBX3P16989 PI4KA-213ENST00000485123 455 ntTSL 312.93□□□□□ -0.344e-8■□□□□ 8.4
YBX3P16989 CTNNA1-227ENST00000521387 871 ntTSL 211.45□□□□□ -0.584e-8■□□□□ 8.4
YBX3P16989 ARHGEF12-203ENST00000525222 2795 ntTSL 59.55□□□□□ -0.884e-8■□□□□ 8.4
YBX3P16989 OSBPL8-213ENST00000550865 642 ntTSL 28.84□□□□□ -0.994e-8■□□□□ 8.4
YBX3P16989 ARHGEF12-206ENST00000528225 2647 ntTSL 58.44□□□□□ -1.064e-8■□□□□ 8.4
YBX3P16989 EIF2A-208ENST00000472926 557 ntTSL 37.36□□□□□ -1.231e-6■□□□□ 8.4
YBX3P16989 HDLBP-243ENST00000488923 582 ntTSL 27.07□□□□□ -1.284e-8■□□□□ 8.4
YBX3P16989 ARHGEF12-212ENST00000532823 1099 ntTSL 56.2□□□□□ -1.424e-8■□□□□ 8.4
YBX3P16989 OSBPL8-204ENST00000546946 2698 ntTSL 24.2□□□□□ -1.744e-8■□□□□ 8.4
YBX3P16989 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.12e-20■□□□□ 8.4
YBX3P16989 PPIB-202ENST00000558492 381 ntTSL 311.68□□□□□ -0.542e-20■□□□□ 8.4
YBX3P16989 EIF2A-206ENST00000465535 1273 ntTSL 58.87□□□□□ -0.997e-7■□□□□ 8.4
YBX3P16989 FUNDC2-205ENST00000484175 666 ntTSL 327.74■■■□□ 2.032e-17■□□□□ 8.4
YBX3P16989 ACSL3-209ENST00000535678 560 ntTSL 327.27■■□□□ 1.964e-8■□□□□ 8.4
YBX3P16989 FBXO22-206ENST00000565131 471 ntTSL 325.59■■□□□ 1.694e-8■□□□□ 8.4
Retrieved 100 of 29,075 protein–RNA pairs in 137 ms