RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 NISCHQ9Y2I1 1504 aa55.11■■■■■ 6.41
CCDC28B-203ENST00000461819 CCDC180Q9P1Z9 1646 aa49■■■■■ 5.43
CCDC28B-203ENST00000461819 ABCC9O60706 1549 aa47.68■■■■■ 5.22
CCDC28B-203ENST00000461819 RB1CC1Q8TDY2 1594 aa45.99■■■■■ 4.95
CCDC28B-203ENST00000461819 ZCCHC6Q5VYS8 1495 aaKnown RBP45.96■■■■■ 4.95
CCDC28B-203ENST00000461819 DCAF8L2P0C7V8 631 aa45.96■■■■■ 4.95
CCDC28B-203ENST00000461819 NACADO15069 1562 aa45.96■■■■■ 4.95
CCDC28B-203ENST00000461819 MYO15BQ96JP2 1530 aa45.69■■■■■ 4.9
CCDC28B-203ENST00000461819 DCAF1Q9Y4B6 1507 aa45.59■■■■■ 4.89
CCDC28B-203ENST00000461819 UNC13AQ9UPW8 1703 aa45.04■■■■■ 4.8
CCDC28B-203ENST00000461819 SCRIBQ14160 1630 aa44.74■■■■■ 4.75
CCDC28B-203ENST00000461819 BICRAQ9NZM4 1560 aa44.54■■■■■ 4.72
CCDC28B-203ENST00000461819 PABPN1Q86U42 306 aaKnown RBP eCLIP44.53■■■■■ 4.72
CCDC28B-203ENST00000461819 SHROOM4Q9ULL8 1493 aa44.09■■■■■ 4.65
CCDC28B-203ENST00000461819 DNAJC5BQ9UF47 199 aa43.44■■■■■ 4.54
CCDC28B-203ENST00000461819 EIF4G1Q04637 1599 aaKnown RBP43.37■■■■■ 4.53
CCDC28B-203ENST00000461819 CC2D2AQ9P2K1 1620 aa43.17■■■■■ 4.5
CCDC28B-203ENST00000461819 CECR2Q9BXF3 1484 aa42.88■■■■■ 4.46
CCDC28B-203ENST00000461819 SMARCA4P51532 1647 aa42.78■■■■■ 4.44
CCDC28B-203ENST00000461819 BAZ1AQ9NRL2 1556 aaPredicted RBP42.73■■■■■ 4.43
CCDC28B-203ENST00000461819 MROH2BQ7Z745 1585 aa42.48■■■■■ 4.39
CCDC28B-203ENST00000461819 SMARCA2P51531 1590 aa42.44■■■■■ 4.38
CCDC28B-203ENST00000461819 ATAD2BQ9ULI0 1458 aa42.41■■■■■ 4.38
CCDC28B-203ENST00000461819 NCAPD3P42695 1498 aa42.33■■■■■ 4.37
CCDC28B-203ENST00000461819 PEG3Q9GZU2 1588 aa42.31■■■■■ 4.36
CCDC28B-203ENST00000461819 HMGXB3Q12766 1538 aa42.22■■■■■ 4.35
CCDC28B-203ENST00000461819 BAZ1BQ9UIG0 1483 aaKnown RBP42.14■■■■■ 4.34
CCDC28B-203ENST00000461819 WIZO95785 1651 aa42.09■■■■■ 4.33
CCDC28B-203ENST00000461819 RSF1Q96T23 1441 aaPredicted RBP42.03■■■■■ 4.32
CCDC28B-203ENST00000461819 TOP2AP11388 1531 aaKnown RBP41.64■■■■■ 4.26
CCDC28B-203ENST00000461819 NESP48681 1621 aa41.31■■■■■ 4.2
CCDC28B-203ENST00000461819 LAMC3Q9Y6N6 1575 aa41.28■■■■■ 4.2
CCDC28B-203ENST00000461819 SUPT5HO00267 1087 aaKnown RBP41.16■■■■■ 4.18
CCDC28B-203ENST00000461819 ERCC6Q03468 1493 aa41.12■■■■■ 4.17
CCDC28B-203ENST00000461819 CADPSQ9ULU8 1353 aa41.12■■■■■ 4.17
CCDC28B-203ENST00000461819 CCDC88BA6NC98 1476 aa41.09■■■■■ 4.17
CCDC28B-203ENST00000461819 PDS5BQ9NTI5 1447 aa40.94■■■■■ 4.14
CCDC28B-203ENST00000461819 KIF21AQ7Z4S6 1674 aa40.94■■■■■ 4.14
CCDC28B-203ENST00000461819 CFTRP13569 1480 aa40.93■■■■■ 4.14
CCDC28B-203ENST00000461819 PRDM2Q13029 1718 aa40.84■■■■■ 4.13
CCDC28B-203ENST00000461819 FANCD2Q9BXW9 1451 aa40.7■■■■■ 4.11
CCDC28B-203ENST00000461819 THOC2Q8NI27 1593 aaKnown RBP40.69■■■■■ 4.11
CCDC28B-203ENST00000461819 CEP164Q9UPV0 1460 aa40.66■■■■■ 4.1
CCDC28B-203ENST00000461819 CUX2O14529 1486 aa40.56■■■■■ 4.08
CCDC28B-203ENST00000461819 MRC2Q9UBG0 1479 aa40.54■■■■■ 4.08
CCDC28B-203ENST00000461819 WDR62O43379 1518 aa40.4■■■■■ 4.06
CCDC28B-203ENST00000461819 URB2Q14146 1524 aaKnown RBP40.27■■■■■ 4.04
CCDC28B-203ENST00000461819 ABCC8Q09428 1581 aa40.08■■■■■ 4.01
CCDC28B-203ENST00000461819 DNMBPQ6XZF7 1577 aa40.08■■■■■ 4.01
CCDC28B-203ENST00000461819 TOPBP1Q92547 1522 aa40.07■■■■■ 4.01
CCDC28B-203ENST00000461819 CUX1P39880 1505 aa39.86■■■■□ 3.97
CCDC28B-203ENST00000461819 IFT140Q96RY7 1462 aa39.76■■■■□ 3.96
CCDC28B-203ENST00000461819 POLA1P09884 1462 aaPredicted RBP39.74■■■■□ 3.95
CCDC28B-203ENST00000461819 FGD5Q6ZNL6 1462 aa39.69■■■■□ 3.94
CCDC28B-203ENST00000461819 WRNQ14191 1432 aaPredicted RBP eCLIP39.66■■■■□ 3.94
CCDC28B-203ENST00000461819 TARBP1Q13395 1621 aaKnown RBP39.64■■■■□ 3.94
CCDC28B-203ENST00000461819 BIVM-ERCC5R4GMW8 1640 aa39.62■■■■□ 3.93
CCDC28B-203ENST00000461819 SYNJ1O43426 1573 aa39.6■■■■□ 3.93
CCDC28B-203ENST00000461819 TOP2BQ02880 1626 aa39.6■■■■□ 3.93
CCDC28B-203ENST00000461819 SOGA1O94964 1423 aa39.56■■■■□ 3.92
CCDC28B-203ENST00000461819 RAD54L2Q9Y4B4 1467 aa39.56■■■■□ 3.92
CCDC28B-203ENST00000461819 ZNF608Q9ULD9 1512 aaPredicted RBP39.55■■■■□ 3.92
CCDC28B-203ENST00000461819 EIF4G3O43432 1585 aaKnown RBP39.5■■■■□ 3.91
CCDC28B-203ENST00000461819 WDR97A6NE52 1622 aa39.43■■■■□ 3.9
CCDC28B-203ENST00000461819 AQRO60306 1485 aaKnown RBP eCLIP39.35■■■■□ 3.893e-7■■■□□ 17
CCDC28B-203ENST00000461819 TDRD9Q8NDG6 1382 aaKnown RBP39.31■■■■□ 3.88
CCDC28B-203ENST00000461819 ABCA10Q8WWZ4 1543 aa39.3■■■■□ 3.88
CCDC28B-203ENST00000461819 ABCA5Q8WWZ7 1642 aa39.18■■■■□ 3.86
CCDC28B-203ENST00000461819 PBRM1Q86U86 1689 aa39.16■■■■□ 3.86
CCDC28B-203ENST00000461819 GAPVD1Q14C86 1478 aa39.13■■■■□ 3.85
CCDC28B-203ENST00000461819 GRIN2BQ13224 1484 aa39.1■■■■□ 3.85
CCDC28B-203ENST00000461819 SNAPC4Q5SXM2 1469 aa39.04■■■■□ 3.84
CCDC28B-203ENST00000461819 CHD1O14646 1710 aa39■■■■□ 3.83
CCDC28B-203ENST00000461819 MAGI1Q96QZ7 1491 aaPredicted RBP38.98■■■■□ 3.83
CCDC28B-203ENST00000461819 DNAJC5Q9H3Z4 198 aa38.98■■■■□ 3.83
CCDC28B-203ENST00000461819 FBLN2P98095 1184 aa38.87■■■■□ 3.81
CCDC28B-203ENST00000461819 OSCARQ8IYS5 282 aa38.86■■■■□ 3.81
CCDC28B-203ENST00000461819 TRIM41Q8WV44 630 aa38.86■■■■□ 3.81
CCDC28B-203ENST00000461819 ERICH3Q5RHP9 1530 aa38.85■■■■□ 3.81
CCDC28B-203ENST00000461819 SYNJ2O15056 1496 aa38.83■■■■□ 3.81
CCDC28B-203ENST00000461819 KIF27Q86VH2 1401 aa38.82■■■■□ 3.81
CCDC28B-203ENST00000461819 ADAMTS12P58397 1594 aa38.8■■■■□ 3.8
CCDC28B-203ENST00000461819 CHMP7Q8WUX9 453 aaPredicted RBP38.77■■■■□ 3.8
CCDC28B-203ENST00000461819 FHAD1B1AJZ9 1412 aa38.67■■■■□ 3.78
CCDC28B-203ENST00000461819 CUL7Q14999 1698 aa38.62■■■■□ 3.77
CCDC28B-203ENST00000461819 GRIN2AQ12879 1464 aa38.6■■■■□ 3.77
CCDC28B-203ENST00000461819 IGF1RP08069 1367 aa38.57■■■■□ 3.76
CCDC28B-203ENST00000461819 RUSC2Q8N2Y8 1516 aa38.51■■■■□ 3.76
CCDC28B-203ENST00000461819 CLASP1Q7Z460 1538 aa38.48■■■■□ 3.75
CCDC28B-203ENST00000461819 CHIC1Q5VXU3 224 aa38.48■■■■□ 3.75
CCDC28B-203ENST00000461819 CEP170Q5SW79 1584 aa38.43■■■■□ 3.74
CCDC28B-203ENST00000461819 NUP160Q12769 1436 aa38.38■■■■□ 3.74
CCDC28B-203ENST00000461819 CARMIL1Q5VZK9 1371 aa38.38■■■■□ 3.73
CCDC28B-203ENST00000461819 RIMBP3CA6NJZ7 1639 aa38.33■■■■□ 3.73
CCDC28B-203ENST00000461819 RIMBP3BA6NNM3 1639 aa38.33■■■■□ 3.73
CCDC28B-203ENST00000461819 RIMBP3Q9UFD9 1639 aa38.33■■■■□ 3.73
CCDC28B-203ENST00000461819 ARHGEF11O15085 1522 aa38.3■■■■□ 3.72
CCDC28B-203ENST00000461819 RAPGEF2Q9Y4G8 1499 aa38.22■■■■□ 3.71
CCDC28B-203ENST00000461819 EEA1Q15075 1411 aa38.21■■■■□ 3.71
CCDC28B-203ENST00000461819 SHROOM2Q13796 1616 aa38.13■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms