Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
COL17A1Q9UMD9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
COL17A1Q9UMD9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
COL17A1Q9UMD9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
COL17A1Q9UMD9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC35.01■■■■□ 3.2
COL17A1Q9UMD9 NCF1B-203ENST00000435988 1254 ntBASIC35.01■■■■□ 3.19
COL17A1Q9UMD9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC35.01■■■■□ 3.19
COL17A1Q9UMD9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC35.01■■■■□ 3.19
COL17A1Q9UMD9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC35.01■■■■□ 3.19
COL17A1Q9UMD9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC35.01■■■■□ 3.19
COL17A1Q9UMD9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC35■■■■□ 3.19
COL17A1Q9UMD9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC35■■■■□ 3.19
COL17A1Q9UMD9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC35■■■■□ 3.19
COL17A1Q9UMD9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC35■■■■□ 3.19
COL17A1Q9UMD9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC35■■■■□ 3.19
COL17A1Q9UMD9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
COL17A1Q9UMD9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 GAS2L1P2-201ENST00000436355 1356 ntBASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC34.98■■■■□ 3.19
COL17A1Q9UMD9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC34.97■■■■□ 3.19
COL17A1Q9UMD9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC34.96■■■■□ 3.19
COL17A1Q9UMD9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
COL17A1Q9UMD9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC34.96■■■■□ 3.19
COL17A1Q9UMD9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC34.96■■■■□ 3.19
COL17A1Q9UMD9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
COL17A1Q9UMD9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC34.96■■■■□ 3.19
COL17A1Q9UMD9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC34.95■■■■□ 3.19
COL17A1Q9UMD9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
COL17A1Q9UMD9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC34.95■■■■□ 3.19
COL17A1Q9UMD9 AC142086.6-201ENST00000621154 1765 ntBASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC34.94■■■■□ 3.18
COL17A1Q9UMD9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC34.93■■■■□ 3.18
COL17A1Q9UMD9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC34.93■■■■□ 3.18
COL17A1Q9UMD9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
COL17A1Q9UMD9 AP005435.1-201ENST00000529293 1178 ntBASIC34.93■■■■□ 3.18
COL17A1Q9UMD9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC34.93■■■■□ 3.18
COL17A1Q9UMD9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC34.93■■■■□ 3.18
COL17A1Q9UMD9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 AC006970.2-201ENST00000450065 779 ntBASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 pRNA.6-201ENST00000610482 90 ntBASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 pRNA.5-201ENST00000612139 90 ntBASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 pRNA.11-201ENST00000618423 90 ntBASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 pRNA.13-201ENST00000619112 90 ntBASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC34.92■■■■□ 3.18
COL17A1Q9UMD9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
COL17A1Q9UMD9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 AC137761.2-201ENST00000561729 223 ntBASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 AC145350.3-201ENST00000569033 163 ntBASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC34.9■■■■□ 3.18
COL17A1Q9UMD9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC34.89■■■■□ 3.18
COL17A1Q9UMD9 AC093827.2-201ENST00000512654 315 ntBASIC34.89■■■■□ 3.18
COL17A1Q9UMD9 AC142086.2-201ENST00000569753 217 ntBASIC34.89■■■■□ 3.18
COL17A1Q9UMD9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
COL17A1Q9UMD9 APTR-205ENST00000447009 902 ntTSL 2 BASIC34.88■■■■□ 3.17
COL17A1Q9UMD9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC34.88■■■■□ 3.17
COL17A1Q9UMD9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC34.87■■■■□ 3.17
COL17A1Q9UMD9 AC016769.1-201ENST00000409132 1010 ntBASIC34.87■■■■□ 3.17
COL17A1Q9UMD9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms