RNA–Protein interactions for RNA: ENST00000618217.4

CBWD3-213, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene CBWD3, Length 1,611 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-213ENST00000618217 NISCHQ9Y2I1 1504 aa54.05■■■■■ 6.24
CBWD3-213ENST00000618217 CCDC180Q9P1Z9 1646 aa47.75■■■■■ 5.24
CBWD3-213ENST00000618217 ABCC9O60706 1549 aa46.07■■■■■ 4.97
CBWD3-213ENST00000618217 ZCCHC6Q5VYS8 1495 aaKnown RBP45.16■■■■■ 4.82
CBWD3-213ENST00000618217 DCAF8L2P0C7V8 631 aa44.8■■■■■ 4.76
CBWD3-213ENST00000618217 DCAF1Q9Y4B6 1507 aa44.76■■■■■ 4.76
CBWD3-213ENST00000618217 NACADO15069 1562 aa44.73■■■■■ 4.75
CBWD3-213ENST00000618217 MYO15BQ96JP2 1530 aa44.71■■■■■ 4.75
CBWD3-213ENST00000618217 RB1CC1Q8TDY2 1594 aa44.59■■■■■ 4.73
CBWD3-213ENST00000618217 UNC13AQ9UPW8 1703 aa43.69■■■■■ 4.58
CBWD3-213ENST00000618217 SCRIBQ14160 1630 aa43.6■■■■■ 4.57
CBWD3-213ENST00000618217 BICRAQ9NZM4 1560 aa43.31■■■■■ 4.52
CBWD3-213ENST00000618217 PABPN1Q86U42 306 aaKnown RBP eCLIP43.17■■■■■ 4.5
CBWD3-213ENST00000618217 SHROOM4Q9ULL8 1493 aa43.04■■■■■ 4.48
CBWD3-213ENST00000618217 EIF4G1Q04637 1599 aaKnown RBP42.06■■■■■ 4.32
CBWD3-213ENST00000618217 CECR2Q9BXF3 1484 aa42.06■■■■■ 4.32
CBWD3-213ENST00000618217 BAZ1AQ9NRL2 1556 aaPredicted RBP41.82■■■■■ 4.29
CBWD3-213ENST00000618217 SMARCA4P51532 1647 aa41.79■■■■■ 4.28
CBWD3-213ENST00000618217 DNAJC5BQ9UF47 199 aa41.77■■■■■ 4.28
CBWD3-213ENST00000618217 CC2D2AQ9P2K1 1620 aa41.73■■■■■ 4.27
CBWD3-213ENST00000618217 MROH2BQ7Z745 1585 aa41.69■■■■■ 4.26
CBWD3-213ENST00000618217 RSF1Q96T23 1441 aaPredicted RBP41.44■■■■■ 4.22
CBWD3-213ENST00000618217 ATAD2BQ9ULI0 1458 aa41.41■■■■■ 4.22
CBWD3-213ENST00000618217 PEG3Q9GZU2 1588 aa41.4■■■■■ 4.22
CBWD3-213ENST00000618217 SMARCA2P51531 1590 aa41.36■■■■■ 4.21
CBWD3-213ENST00000618217 NCAPD3P42695 1498 aa41.29■■■■■ 4.2
CBWD3-213ENST00000618217 WIZO95785 1651 aa41.26■■■■■ 4.2
CBWD3-213ENST00000618217 HMGXB3Q12766 1538 aa41.12■■■■■ 4.17
CBWD3-213ENST00000618217 BAZ1BQ9UIG0 1483 aaKnown RBP41.06■■■■■ 4.16
CBWD3-213ENST00000618217 TOP2AP11388 1531 aaKnown RBP40.83■■■■■ 4.13
CBWD3-213ENST00000618217 SUPT5HO00267 1087 aaKnown RBP40.82■■■■■ 4.13
CBWD3-213ENST00000618217 CCDC88BA6NC98 1476 aa40.37■■■■■ 4.05
CBWD3-213ENST00000618217 CADPSQ9ULU8 1353 aa40.1■■■■■ 4.01
CBWD3-213ENST00000618217 NESP48681 1621 aa40.1■■■■■ 4.01
CBWD3-213ENST00000618217 LAMC3Q9Y6N6 1575 aa40.07■■■■■ 4
CBWD3-213ENST00000618217 CFTRP13569 1480 aa40.02■■■■■ 4
CBWD3-213ENST00000618217 PRDM2Q13029 1718 aa39.78■■■■□ 3.96
CBWD3-213ENST00000618217 PDS5BQ9NTI5 1447 aa39.75■■■■□ 3.95
CBWD3-213ENST00000618217 KIF21AQ7Z4S6 1674 aa39.65■■■■□ 3.94
CBWD3-213ENST00000618217 FANCD2Q9BXW9 1451 aa39.63■■■■□ 3.93
CBWD3-213ENST00000618217 ERCC6Q03468 1493 aa39.59■■■■□ 3.93
CBWD3-213ENST00000618217 CEP164Q9UPV0 1460 aa39.49■■■■□ 3.91
CBWD3-213ENST00000618217 THOC2Q8NI27 1593 aaKnown RBP39.34■■■■□ 3.89
CBWD3-213ENST00000618217 MRC2Q9UBG0 1479 aa39.31■■■■□ 3.88
CBWD3-213ENST00000618217 URB2Q14146 1524 aaKnown RBP39.23■■■■□ 3.87
CBWD3-213ENST00000618217 WDR62O43379 1518 aa39.18■■■■□ 3.86
CBWD3-213ENST00000618217 ABCC8Q09428 1581 aa39.09■■■■□ 3.85
CBWD3-213ENST00000618217 DNMBPQ6XZF7 1577 aa39.09■■■■□ 3.85
CBWD3-213ENST00000618217 TOPBP1Q92547 1522 aa39.08■■■■□ 3.85
CBWD3-213ENST00000618217 CUX1P39880 1505 aa39.06■■■■□ 3.84
CBWD3-213ENST00000618217 WRNQ14191 1432 aaPredicted RBP eCLIP39.01■■■■□ 3.84
CBWD3-213ENST00000618217 CUX2O14529 1486 aa38.98■■■■□ 3.83
CBWD3-213ENST00000618217 SYNJ1O43426 1573 aa38.92■■■■□ 3.82
CBWD3-213ENST00000618217 TOP2BQ02880 1626 aa38.89■■■■□ 3.82
CBWD3-213ENST00000618217 BIVM-ERCC5R4GMW8 1640 aa38.88■■■■□ 3.82
CBWD3-213ENST00000618217 POLA1P09884 1462 aaPredicted RBP38.8■■■■□ 3.8
CBWD3-213ENST00000618217 FGD5Q6ZNL6 1462 aa38.79■■■■□ 3.8
CBWD3-213ENST00000618217 IFT140Q96RY7 1462 aa38.65■■■■□ 3.78
CBWD3-213ENST00000618217 TARBP1Q13395 1621 aaKnown RBP38.64■■■■□ 3.78
CBWD3-213ENST00000618217 SOGA1O94964 1423 aa38.63■■■■□ 3.77
CBWD3-213ENST00000618217 RAD54L2Q9Y4B4 1467 aa38.63■■■■□ 3.77
CBWD3-213ENST00000618217 CHIC1Q5VXU3 224 aa38.54■■■■□ 3.76
CBWD3-213ENST00000618217 TRIM41Q8WV44 630 aa38.52■■■■□ 3.76
CBWD3-213ENST00000618217 WDR97A6NE52 1622 aa38.48■■■■□ 3.75
CBWD3-213ENST00000618217 ABCA10Q8WWZ4 1543 aa38.46■■■■□ 3.75
CBWD3-213ENST00000618217 ZNF608Q9ULD9 1512 aaPredicted RBP38.46■■■■□ 3.75
CBWD3-213ENST00000618217 TDRD9Q8NDG6 1382 aaKnown RBP38.35■■■■□ 3.73
CBWD3-213ENST00000618217 AQRO60306 1485 aaKnown RBP eCLIP38.32■■■■□ 3.72
CBWD3-213ENST00000618217 EIF4G3O43432 1585 aaKnown RBP38.32■■■■□ 3.72
CBWD3-213ENST00000618217 ABCA5Q8WWZ7 1642 aa38.26■■■■□ 3.72
CBWD3-213ENST00000618217 GAPVD1Q14C86 1478 aa38.2■■■■□ 3.71
CBWD3-213ENST00000618217 KIF27Q86VH2 1401 aa38.13■■■■□ 3.69
CBWD3-213ENST00000618217 GRIN2BQ13224 1484 aa38.1■■■■□ 3.69
CBWD3-213ENST00000618217 PBRM1Q86U86 1689 aa38.09■■■■□ 3.69
CBWD3-213ENST00000618217 RUSC2Q8N2Y8 1516 aa38.06■■■■□ 3.68
CBWD3-213ENST00000618217 ERICH3Q5RHP9 1530 aa38.01■■■■□ 3.68
CBWD3-213ENST00000618217 IGF1RP08069 1367 aa37.96■■■■□ 3.67
CBWD3-213ENST00000618217 SNAPC4Q5SXM2 1469 aa37.95■■■■□ 3.67
CBWD3-213ENST00000618217 MAGI1Q96QZ7 1491 aaPredicted RBP37.93■■■■□ 3.66
CBWD3-213ENST00000618217 EEA1Q15075 1411 aa37.84■■■■□ 3.65
CBWD3-213ENST00000618217 ADAMTS12P58397 1594 aa37.82■■■■□ 3.65
CBWD3-213ENST00000618217 FHAD1B1AJZ9 1412 aa37.78■■■■□ 3.64
CBWD3-213ENST00000618217 SYNJ2O15056 1496 aa37.78■■■■□ 3.64
CBWD3-213ENST00000618217 CUL7Q14999 1698 aa37.78■■■■□ 3.64
CBWD3-213ENST00000618217 CHD1O14646 1710 aa37.73■■■■□ 3.63
CBWD3-213ENST00000618217 CSRNP3Q8WYN3 585 aa37.72■■■■□ 3.63
CBWD3-213ENST00000618217 CARMIL1Q5VZK9 1371 aa37.71■■■■□ 3.63
CBWD3-213ENST00000618217 FAM9AQ8IZU1 332 aaPredicted RBP37.7■■■■□ 3.63
CBWD3-213ENST00000618217 CHMP7Q8WUX9 453 aaPredicted RBP37.68■■■■□ 3.62
CBWD3-213ENST00000618217 FBLN2P98095 1184 aa37.66■■■■□ 3.62
CBWD3-213ENST00000618217 GRIN2AQ12879 1464 aa37.62■■■■□ 3.61
CBWD3-213ENST00000618217 PRXQ9BXM0 1461 aa37.62■■■■□ 3.61
CBWD3-213ENST00000618217 RAPGEF2Q9Y4G8 1499 aa37.55■■■■□ 3.6
CBWD3-213ENST00000618217 OSCARQ8IYS5 282 aa37.5■■■■□ 3.59
CBWD3-213ENST00000618217 NUP160Q12769 1436 aa37.45■■■■□ 3.59
CBWD3-213ENST00000618217 KIF21BO75037 1637 aa37.43■■■■□ 3.58
CBWD3-213ENST00000618217 CEP170Q5SW79 1584 aa37.42■■■■□ 3.58
CBWD3-213ENST00000618217 CLASP1Q7Z460 1538 aa37.33■■■■□ 3.57
CBWD3-213ENST00000618217 KIAA0586Q9BVV6 1533 aa37.24■■■■□ 3.55
CBWD3-213ENST00000618217 GOLGA3Q08378 1498 aa37.22■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms