Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
FOXN3O00409 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.34■■□□□ 1.49
FOXN3O00409 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.34■■□□□ 1.49
FOXN3O00409 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
FOXN3O00409 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXN3O00409 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
FOXN3O00409 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXN3O00409 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
FOXN3O00409 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXN3O00409 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
FOXN3O00409 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
FOXN3O00409 AC068473.5-201ENST00000616428 2072 ntBASIC24.33■■□□□ 1.49
FOXN3O00409 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
FOXN3O00409 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
FOXN3O00409 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
FOXN3O00409 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
FOXN3O00409 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
FOXN3O00409 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
FOXN3O00409 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.33■■□□□ 1.49
FOXN3O00409 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.33■■□□□ 1.49
FOXN3O00409 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.33■■□□□ 1.49
FOXN3O00409 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
FOXN3O00409 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
FOXN3O00409 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
FOXN3O00409 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
FOXN3O00409 AC092068.2-201ENST00000590491 1708 ntBASIC24.32■■□□□ 1.48
FOXN3O00409 AC021242.3-201ENST00000607598 1377 ntBASIC24.32■■□□□ 1.48
FOXN3O00409 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.32■■□□□ 1.48
FOXN3O00409 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
FOXN3O00409 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.32■■□□□ 1.48
FOXN3O00409 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.31■■□□□ 1.48
FOXN3O00409 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
FOXN3O00409 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.31■■□□□ 1.48
FOXN3O00409 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
FOXN3O00409 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
FOXN3O00409 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
FOXN3O00409 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.31■■□□□ 1.48
FOXN3O00409 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.31■■□□□ 1.48
FOXN3O00409 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
FOXN3O00409 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
FOXN3O00409 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
FOXN3O00409 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
FOXN3O00409 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.3■■□□□ 1.48
FOXN3O00409 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
FOXN3O00409 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.3■■□□□ 1.48
FOXN3O00409 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.3■■□□□ 1.48
FOXN3O00409 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
FOXN3O00409 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
FOXN3O00409 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
FOXN3O00409 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
FOXN3O00409 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
FOXN3O00409 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
FOXN3O00409 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC24.29■■□□□ 1.48
FOXN3O00409 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
FOXN3O00409 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
FOXN3O00409 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
FOXN3O00409 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.28■■□□□ 1.48
FOXN3O00409 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
FOXN3O00409 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC24.28■■□□□ 1.48
FOXN3O00409 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
FOXN3O00409 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.28■■□□□ 1.48
FOXN3O00409 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.28■■□□□ 1.48
FOXN3O00409 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
FOXN3O00409 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.28■■□□□ 1.48
FOXN3O00409 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.28■■□□□ 1.48
FOXN3O00409 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
FOXN3O00409 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
FOXN3O00409 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.28■■□□□ 1.48
FOXN3O00409 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
FOXN3O00409 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
FOXN3O00409 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.27■■□□□ 1.48
FOXN3O00409 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 BX664725.1-201ENST00000438252 379 ntBASIC24.27■■□□□ 1.48
FOXN3O00409 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.27■■□□□ 1.48
FOXN3O00409 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.27■■□□□ 1.48
FOXN3O00409 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.27■■□□□ 1.48
FOXN3O00409 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
FOXN3O00409 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
FOXN3O00409 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
FOXN3O00409 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.26■■□□□ 1.47
FOXN3O00409 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
FOXN3O00409 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.26■■□□□ 1.47
FOXN3O00409 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
FOXN3O00409 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
FOXN3O00409 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.26■■□□□ 1.47
FOXN3O00409 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.26■■□□□ 1.47
FOXN3O00409 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
FOXN3O00409 DUSP8P3-201ENST00000399571 1760 ntBASIC24.26■■□□□ 1.47
FOXN3O00409 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.26■■□□□ 1.47
FOXN3O00409 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.25■■□□□ 1.47
FOXN3O00409 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
FOXN3O00409 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
FOXN3O00409 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
FOXN3O00409 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
FOXN3O00409 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms