Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 AC142381.3-201ENST00000568208 1670 ntBASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 AC138932.3-201ENST00000567634 1902 ntBASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 C17orf82-201ENST00000623772 1530 ntBASIC18.49■□□□□ 0.55
TRAV40A0A0B4J280 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.48■□□□□ 0.55
TRAV40A0A0B4J280 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 SERBP1P1-201ENST00000396021 1160 ntBASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 AL031432.3-201ENST00000607698 485 ntBASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 AL355001.2-201ENST00000620617 1191 ntBASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV40A0A0B4J280 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 MIR4767-201ENST00000582827 78 ntBASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV40A0A0B4J280 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.46■□□□□ 0.54
TRAV40A0A0B4J280 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
TRAV40A0A0B4J280 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.46■□□□□ 0.54
TRAV40A0A0B4J280 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 AF213884.3-201ENST00000563833 479 ntBASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 AC009086.3-201ENST00000623486 1008 ntBASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 AC241377.3-202ENST00000626088 1088 ntBASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 AC241585.3-202ENST00000628937 1088 ntBASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 AC245100.8-202ENST00000629247 1058 ntBASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV40A0A0B4J280 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 AC020928.2-201ENST00000588717 2197 ntBASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV40A0A0B4J280 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 SUDS3P1-201ENST00000505831 966 ntBASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 AP001330.3-201ENST00000520123 633 ntBASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
TRAV40A0A0B4J280 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV40A0A0B4J280 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms