Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
DDX4Q9NQI0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
DDX4Q9NQI0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
DDX4Q9NQI0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC27.18■■□□□ 1.94
DDX4Q9NQI0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC27.18■■□□□ 1.94
DDX4Q9NQI0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
DDX4Q9NQI0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
DDX4Q9NQI0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC27.17■■□□□ 1.94
DDX4Q9NQI0 AC006455.2-201ENST00000429931 906 ntBASIC27.17■■□□□ 1.94
DDX4Q9NQI0 AC105265.2-201ENST00000467189 838 ntBASIC27.17■■□□□ 1.94
DDX4Q9NQI0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC27.17■■□□□ 1.94
DDX4Q9NQI0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
DDX4Q9NQI0 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
DDX4Q9NQI0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 RARRES2P6-201ENST00000567333 442 ntBASIC27.16■■□□□ 1.94
DDX4Q9NQI0 AC092171.4-201ENST00000609130 632 ntBASIC27.16■■□□□ 1.94
DDX4Q9NQI0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 AC135731.1-201ENST00000569415 2548 ntBASIC27.16■■□□□ 1.94
DDX4Q9NQI0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
DDX4Q9NQI0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 MAG-206ENST00000597035 542 ntTSL 4 BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC27.15■■□□□ 1.94
DDX4Q9NQI0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
DDX4Q9NQI0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
DDX4Q9NQI0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC27.14■■□□□ 1.94
DDX4Q9NQI0 AC026271.2-201ENST00000428091 497 ntBASIC27.14■■□□□ 1.94
DDX4Q9NQI0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC27.14■■□□□ 1.94
DDX4Q9NQI0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC27.14■■□□□ 1.94
DDX4Q9NQI0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
DDX4Q9NQI0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.93
DDX4Q9NQI0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
DDX4Q9NQI0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
DDX4Q9NQI0 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
DDX4Q9NQI0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 AL161729.1-201ENST00000604104 1402 ntBASIC27.12■■□□□ 1.93
DDX4Q9NQI0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
DDX4Q9NQI0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
DDX4Q9NQI0 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 AC011298.3-201ENST00000615796 283 ntBASIC27.1■■□□□ 1.93
DDX4Q9NQI0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.1■■□□□ 1.93
DDX4Q9NQI0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.1■■□□□ 1.93
DDX4Q9NQI0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 ALDH1A3-203ENST00000557963 1670 ntBASIC27.09■■□□□ 1.93
DDX4Q9NQI0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 AC091305.1-201ENST00000479476 895 ntBASIC27.09■■□□□ 1.93
DDX4Q9NQI0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.09■■□□□ 1.93
DDX4Q9NQI0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
DDX4Q9NQI0 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
DDX4Q9NQI0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
DDX4Q9NQI0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
DDX4Q9NQI0 AL138724.1-201ENST00000606771 1088 ntBASIC27.08■■□□□ 1.93
DDX4Q9NQI0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC27.08■■□□□ 1.93
DDX4Q9NQI0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.08■■□□□ 1.93
DDX4Q9NQI0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 253.5 ms