Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CSMD1Q96PZ7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 KRT18P14-201ENST00000534205 1250 ntBASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 AC006455.2-201ENST00000429931 906 ntBASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CSMD1Q96PZ7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 AC090877.2-201ENST00000558441 1738 ntBASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 NTF6G-201ENST00000591094 616 ntBASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD1Q96PZ7 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSMD1Q96PZ7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSMD1Q96PZ7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CSMD1Q96PZ7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CSMD1Q96PZ7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CSMD1Q96PZ7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CSMD1Q96PZ7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 AC073111.5-205ENST00000641717 521 ntBASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSMD1Q96PZ7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 MIR4651-201ENST00000582622 73 ntBASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSMD1Q96PZ7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 AC005703.6-201ENST00000623265 1329 ntBASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD1Q96PZ7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 KRT18P6-201ENST00000555540 1265 ntBASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CSMD1Q96PZ7 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSMD1Q96PZ7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms