Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA3Q8IX90 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
SKA3Q8IX90 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SKA3Q8IX90 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA3Q8IX90 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SKA3Q8IX90 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA3Q8IX90 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.08■□□□□ 0.81
SKA3Q8IX90 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.08■□□□□ 0.81
SKA3Q8IX90 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA3Q8IX90 AC092028.1-203ENST00000608262 953 ntBASIC20.08■□□□□ 0.81
SKA3Q8IX90 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SKA3Q8IX90 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SKA3Q8IX90 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
SKA3Q8IX90 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.07■□□□□ 0.8
SKA3Q8IX90 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.07■□□□□ 0.8
SKA3Q8IX90 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.07■□□□□ 0.8
SKA3Q8IX90 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SKA3Q8IX90 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA3Q8IX90 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.06■□□□□ 0.8
SKA3Q8IX90 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.06■□□□□ 0.8
SKA3Q8IX90 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA3Q8IX90 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.06■□□□□ 0.8
SKA3Q8IX90 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA3Q8IX90 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SKA3Q8IX90 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA3Q8IX90 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA3Q8IX90 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SKA3Q8IX90 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SKA3Q8IX90 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.04■□□□□ 0.8
SKA3Q8IX90 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 AC079834.2-201ENST00000609776 1949 ntBASIC20.04■□□□□ 0.8
SKA3Q8IX90 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.04■□□□□ 0.8
SKA3Q8IX90 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.04■□□□□ 0.8
SKA3Q8IX90 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SKA3Q8IX90 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA3Q8IX90 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SKA3Q8IX90 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.03■□□□□ 0.8
SKA3Q8IX90 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SKA3Q8IX90 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.03■□□□□ 0.8
SKA3Q8IX90 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA3Q8IX90 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SKA3Q8IX90 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.03■□□□□ 0.8
SKA3Q8IX90 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA3Q8IX90 CLDN5-201ENST00000403084 2357 ntBASIC20.03■□□□□ 0.8
SKA3Q8IX90 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA3Q8IX90 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.02■□□□□ 0.8
SKA3Q8IX90 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.02■□□□□ 0.8
SKA3Q8IX90 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.02■□□□□ 0.8
SKA3Q8IX90 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.02■□□□□ 0.8
SKA3Q8IX90 ALDH1A3-203ENST00000557963 1670 ntBASIC20.02■□□□□ 0.8
SKA3Q8IX90 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA3Q8IX90 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.02■□□□□ 0.79
SKA3Q8IX90 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.02■□□□□ 0.79
SKA3Q8IX90 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SKA3Q8IX90 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SKA3Q8IX90 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms