Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF404Q494X3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF404Q494X3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ZNF404Q494X3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 MIR3960-201ENST00000583311 91 ntBASIC20.53■□□□□ 0.88
ZNF404Q494X3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 SLC25A24-204ENST00000569674 2357 ntBASIC20.53■□□□□ 0.88
ZNF404Q494X3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF404Q494X3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
ZNF404Q494X3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF404Q494X3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 RP9P-202ENST00000450133 1212 ntBASIC20.51■□□□□ 0.87
ZNF404Q494X3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
ZNF404Q494X3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
ZNF404Q494X3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF404Q494X3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 NTF6A-201ENST00000591175 560 ntBASIC20.49■□□□□ 0.87
ZNF404Q494X3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ZNF404Q494X3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF404Q494X3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
ZNF404Q494X3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 AC093536.1-201ENST00000569153 554 ntBASIC20.47■□□□□ 0.87
ZNF404Q494X3 U85056.1-201ENST00000616429 682 ntBASIC20.47■□□□□ 0.87
ZNF404Q494X3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 DUSP8P3-201ENST00000399571 1760 ntBASIC20.46■□□□□ 0.87
ZNF404Q494X3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 AL137060.1-201ENST00000618151 2648 ntBASIC20.46■□□□□ 0.87
ZNF404Q494X3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
ZNF404Q494X3 HLA-L-211ENST00000482052 1765 ntBASIC20.45■□□□□ 0.86
ZNF404Q494X3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 AC026202.3-201ENST00000600805 1127 ntBASIC20.45■□□□□ 0.86
ZNF404Q494X3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms