Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF404Q494X3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF404Q494X3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ZNF404Q494X3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 MIR3960-201ENST00000583311 91 ntBASIC20.53■□□□□ 0.88
ZNF404Q494X3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 SLC25A24-204ENST00000569674 2357 ntBASIC20.53■□□□□ 0.88
ZNF404Q494X3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF404Q494X3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF404Q494X3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.52■□□□□ 0.88
ZNF404Q494X3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
ZNF404Q494X3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF404Q494X3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 RP9P-202ENST00000450133 1212 ntBASIC20.51■□□□□ 0.87
ZNF404Q494X3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF404Q494X3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF404Q494X3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
ZNF404Q494X3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
ZNF404Q494X3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF404Q494X3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF404Q494X3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 NTF6A-201ENST00000591175 560 ntBASIC20.49■□□□□ 0.87
ZNF404Q494X3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF404Q494X3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF404Q494X3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ZNF404Q494X3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF404Q494X3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
ZNF404Q494X3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF404Q494X3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 AC093536.1-201ENST00000569153 554 ntBASIC20.47■□□□□ 0.87
ZNF404Q494X3 U85056.1-201ENST00000616429 682 ntBASIC20.47■□□□□ 0.87
ZNF404Q494X3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF404Q494X3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF404Q494X3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 DUSP8P3-201ENST00000399571 1760 ntBASIC20.46■□□□□ 0.87
ZNF404Q494X3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF404Q494X3 AL137060.1-201ENST00000618151 2648 ntBASIC20.46■□□□□ 0.87
ZNF404Q494X3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF404Q494X3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
ZNF404Q494X3 HLA-L-211ENST00000482052 1765 ntBASIC20.45■□□□□ 0.86
ZNF404Q494X3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 AC026202.3-201ENST00000600805 1127 ntBASIC20.45■□□□□ 0.86
ZNF404Q494X3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms